2jsx: Difference between revisions

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{{Seed}}
[[Image:2jsx.png|left|200px]]


<!--
==Solution structure of the E. coli Tat proofreading chaperone protein NapD==
The line below this paragraph, containing "STRUCTURE_2jsx", creates the "Structure Box" on the page.
<StructureSection load='2jsx' size='340' side='right'caption='[[2jsx]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2jsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsx OCA], [https://pdbe.org/2jsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsx RCSB], [https://www.ebi.ac.uk/pdbsum/2jsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsx ProSAT]</span></td></tr>
{{STRUCTURE_2jsx|  PDB=2jsx  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsx_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jsx ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The twin-arginine transport (Tat) system is dedicated to the translocation of folded proteins across the bacterial cytoplasmic membrane. Proteins are targeted to the Tat system by signal peptides containing a twin-arginine motif. In Escherichia coli, many Tat substrates bind redox-active cofactors in the cytoplasm before transport. Coordination of cofactor insertion with protein export involves a "Tat proofreading" process in which chaperones bind twin-arginine signal peptides, thus preventing premature export. The initial Tat signal-binding proteins described belonged to the TorD family, which are required for assembly of N- and S-oxide reductases. Here, we report that E. coli NapD is a Tat signal peptide-binding chaperone involved in biosynthesis of the Tat-dependent nitrate reductase NapA. NapD binds tightly and specifically to the NapA twin-arginine signal peptide and suppresses signal peptide translocation activity such that transport via the Tat pathway is retarded. High-resolution, heteronuclear, multidimensional NMR spectroscopy reveals the 3D solution structure of NapD. The chaperone adopts a ferredoxin-type fold, which is completely distinct from the TorD family. Thus, NapD represents a new family of twin-arginine signal-peptide-binding proteins.


===Solution structure of the E. coli Tat proofreading chaperone protein NapD===
Structural diversity in twin-arginine signal peptide-binding proteins.,Maillard J, Spronk CA, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15641-6. Epub 2007 Sep 27. PMID:17901208<ref>PMID:17901208</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
The line below this paragraph, {{ABSTRACT_PUBMED_17901208}}, adds the Publication Abstract to the page
<div class="pdbe-citations 2jsx" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 17901208 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_17901208}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Escherichia coli K-12]]
2JSX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSX OCA].
[[Category: Large Structures]]
 
[[Category: Sargent F]]
==Reference==
[[Category: Spronk CAEM]]
<ref group="xtra">PMID:17901208</ref><references group="xtra"/>
[[Category: Vuister GW]]
[[Category: Escherichia coli]]
[[Category: Sargent, F.]]
[[Category: Spronk, C A.E M.]]
[[Category: Vuister, G W.]]
[[Category: Chaperone]]
[[Category: Cytoplasm]]
[[Category: Napd]]
[[Category: Nmr]]
[[Category: Proofreading]]
[[Category: Protein]]
[[Category: Tat]]
 
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Retrieved from "https://proteopedia.org/2jsx"