1k2d: Difference between revisions

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{{Seed}}
[[Image:1k2d.png|left|200px]]


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==Crystal structure of the autoimmune MHC class II I-Au complexed with myelin basic protein 1-11 at 2.2A==
The line below this paragraph, containing "STRUCTURE_1k2d", creates the "Structure Box" on the page.
<StructureSection load='1k2d' size='340' side='right'caption='[[1k2d]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1k2d]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K2D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
{{STRUCTURE_1k2d|  PDB=1k2d  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k2d OCA], [https://pdbe.org/1k2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k2d RCSB], [https://www.ebi.ac.uk/pdbsum/1k2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k2d ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/HA2U_MOUSE HA2U_MOUSE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/1k2d_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k2d ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Murine experimental allergic encephalomyelitis (EAE) is a useful model for the demyelinating, autoimmune disease multiple sclerosis. In the EAE system, the immunodominant N-terminal epitope of myelin basic protein (MBP) is an unusually short, weakly binding peptide antigen which elicits highly biased TCR chain usage. In the 2.2 A crystal structure of I-A(u)/MBP1-11 complex, only MBP residues 1-7 are bound toward one end of the peptide binding cleft. The fourth residue of MBP1-11 is located in an incompatible p6 pocket of I-A(u), thus explaining the short half-life of I-A(u) complexed with Ac1-11. MBP peptides extended at the C terminus of Ac1-11 result in dramatic affinity increases, likely attributed to register shifting to a higher affinity cryptic epitope, which could potentially mask the presentation of the immunodominant MBP1-11 peptide during thymic education.


===Crystal structure of the autoimmune MHC class II I-Au complexed with myelin basic protein 1-11 at 2.2A===
Structural snapshot of aberrant antigen presentation linked to autoimmunity: the immunodominant epitope of MBP complexed with I-Au.,He XL, Radu C, Sidney J, Sette A, Ward ES, Garcia KC Immunity. 2002 Jul;17(1):83-94. PMID:12150894<ref>PMID:12150894</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1k2d" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_12150894}}, adds the Publication Abstract to the page
*[[MHC 3D structures|MHC 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12150894 is the PubMed ID number.
*[[MHC II 3D structures|MHC II 3D structures]]
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== References ==
{{ABSTRACT_PUBMED_12150894}}
<references/>
 
__TOC__
==About this Structure==
</StructureSection>
1K2D is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2D OCA].
[[Category: Homo sapiens]]
 
[[Category: Large Structures]]
==Reference==
<ref group="xtra">PMID:12150894</ref><references group="xtra"/>
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Garcia, K C.]]
[[Category: Garcia KC]]
[[Category: He, X L.]]
[[Category: He XL]]
[[Category: Radu, C.]]
[[Category: Radu C]]
[[Category: Ward, E S.]]
[[Category: Ward ES]]
[[Category: Autoimmune disease]]
[[Category: Crystal structure]]
[[Category: Experimental autoimmune encephalomyelitis]]
[[Category: H-2u]]
[[Category: I-au]]
[[Category: Mhc class ii]]
[[Category: Myelin basic protein]]
[[Category: Unique register]]
 
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Retrieved from "https://proteopedia.org/1k2d"