2rjb: Difference between revisions

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[[Image:2rjb.gif|left|200px]]


{{Structure
==Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276==
|PDB= 2rjb |SIZE=350|CAPTION= <scene name='initialview01'>2rjb</scene>, resolution 2.60&Aring;
<StructureSection load='2rjb' size='340' side='right'caption='[[2rjb]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
<table><tr><td colspan='2'>[[2rjb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RJB FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
|GENE= S1487, SF1787 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 Shigella flexneri])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5383 COG5383]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjb OCA], [https://pdbe.org/2rjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rjb RCSB], [https://www.ebi.ac.uk/pdbsum/2rjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rjb ProSAT], [https://www.topsan.org/Proteins/NESGC/2rjb TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjb OCA], [http://www.ebi.ac.uk/pdbsum/2rjb PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rjb RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/HGLS_SHIFL HGLS_SHIFL] Catalyzes the decarboxylation and hydroxylation of 2-oxoadipate (2OA) to form D-2-hydroxyglutarate (D-2-HGA).[UniProtKB:Q88CC1]
'''Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2RJB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJB OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/2rjb_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rjb ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Shigella flexneri]]
[[Category: Shigella flexneri]]
[[Category: Single protein]]
[[Category: Acton TB]]
[[Category: Acton, T B.]]
[[Category: Baran MC]]
[[Category: Baran, M C.]]
[[Category: Chen Y]]
[[Category: Chen, Y.]]
[[Category: Cunningham K]]
[[Category: Cunningham, K.]]
[[Category: Fang Y]]
[[Category: Fang, Y.]]
[[Category: Hunt JF]]
[[Category: Hunt, J F.]]
[[Category: Liu J]]
[[Category: Liu, J.]]
[[Category: Ma L-C]]
[[Category: Ma, L-C.]]
[[Category: Montelione GT]]
[[Category: Montelione, G T.]]
[[Category: Rost B]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Seetharaman J]]
[[Category: Rost, B.]]
[[Category: Tong L]]
[[Category: Seetharaman, J.]]
[[Category: Wang D]]
[[Category: Tong, L.]]
[[Category: Xia R]]
[[Category: Wang, D.]]
[[Category: Xia, R.]]
[[Category: nesg]]
[[Category: northeast structural genomics consortium]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: uncharacterized protein]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:13 2008''

Latest revision as of 05:30, 17 October 2024

Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276

2rjb, resolution 2.60Å

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