3ce9: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
New page: left|200px<br /><applet load="3ce9" size="350" color="white" frame="true" align="right" spinBox="true" caption="3ce9, resolution 2.370Å" /> '''Crystal structure o...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3ce9.jpg|left|200px]]<br /><applet load="3ce9" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3ce9, resolution 2.370&Aring;" />
'''Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution'''<br />


==About this Structure==
==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
3CE9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=PEG:'>PEG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+400'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+B+400'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Residue+C+400'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Residue+D+400'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+C+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+D+401'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+401'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+402'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+403'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+401'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+C+402'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+C+403'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+C+404'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+C+405'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+C+406'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+D+402'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+D+403'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+D+404'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+D+405'>CC1</scene>, <scene name='pdbsite=CC2:Peg+Binding+Site+For+Residue+A+404'>CC2</scene> and <scene name='pdbsite=CC3:Peg+Binding+Site+For+Residue+D+406'>CC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].
<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
[[Category: Clostridium acetobutylicum atcc 824]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
[[Category: JCSG, Joint Center for Structural Genomics.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.37&#8491;</td></tr>
[[Category: EDO]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: PEG]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
[[Category: ZN]]
</table>
[[Category: 3-dehydroquinate synthase]]
== Function ==
[[Category: glycerol dehydrogenase]]
[https://www.uniprot.org/uniprot/Q97IL4_CLOAB Q97IL4_CLOAB]  
[[Category: jcsg]]
== Evolutionary Conservation ==
[[Category: joint center for structural genomic]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: np_348253 1]]
Check<jmol>
[[Category: oxidoreductase]]
  <jmolCheckbox>
[[Category: protein structure initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>
[[Category: psi-2]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomic]]
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:41:29 2008''
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ce9 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Clostridium acetobutylicum ATCC 824]]
[[Category: Large Structures]]
Retrieved from "https://proteopedia.org/3ce9"