3oca: Difference between revisions

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{{Seed}}
[[Image:3oca.jpg|left|200px]]


<!--
==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==
The line below this paragraph, containing "STRUCTURE_3oca", creates the "Structure Box" on the page.
<StructureSection load='3oca' size='340' side='right'caption='[[3oca]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ehrlichia_chaffeensis_str._Arkansas Ehrlichia chaffeensis str. Arkansas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OCA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3oca|  PDB=3oca  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [https://pdbe.org/3oca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [https://www.ebi.ac.uk/pdbsum/3oca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oca ProSAT]</span></td></tr>
 
</table>
===Crystal structure of peptide deformylase from Ehrlichia chaffeensis===
== Function ==
 
[https://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3OCA is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Ehrlichia_chaffeensis Ehrlichia chaffeensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA].  
Check<jmol>
[[Category: Ehrlichia chaffeensis]]
  <jmolCheckbox>
[[Category: Peptide deformylase]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Ehrlichia chaffeensis]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Hydrolase]]
  </jmolCheckbox>
[[Category: Peptide deformylase]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oca ConSurf].
[[Category: Seattle structural genomics center for infectious disease]]
<div style="clear:both"></div>
[[Category: Ssgcid]]
__TOC__
[[Category: Structural genomic]]
</StructureSection>
 
[[Category: Ehrlichia chaffeensis str. Arkansas]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Sep 10 14:03:01 2010''
[[Category: Large Structures]]
Retrieved from "https://proteopedia.org/3oca"