6o7b: Difference between revisions

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<StructureSection load='6o7b' size='340' side='right'caption='[[6o7b]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='6o7b' size='340' side='right'caption='[[6o7b]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6o7b]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O7B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6O7B FirstGlance]. <br>
<table><tr><td colspan='2'>[[6o7b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_onnurineus Thermococcus onnurineus], [https://en.wikipedia.org/wiki/Thermococcus_onnurineus_NA1 Thermococcus onnurineus NA1] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6O7B FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6o7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o7b OCA], [http://pdbe.org/6o7b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6o7b RCSB], [http://www.ebi.ac.uk/pdbsum/6o7b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6o7b ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6o7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o7b OCA], [https://pdbe.org/6o7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6o7b RCSB], [https://www.ebi.ac.uk/pdbsum/6o7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6o7b ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/CAS10_THEON CAS10_THEON]] CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). The type III-A Csm effector complex binds crRNA and acts as a crRNA-guided RNase, DNase and cyclic oligoadenylate synthase; binding of target RNA cognate to the crRNA is required for all activities.[UniProtKB:A0A0A7HFE1]  A single-strand deoxyribonuclease (ssDNase) which digests linear and circular ssDNA; has 5'-3' and 3'-5' exonuclease activity as well as a less efficient endonuclease activity. Has a minimal size requirement; 100 nucleotide ssDNA (nt) is more efficiently digested than 50 or 25 nt ssDNA, while 14 nt ssDNA is not cleaved at all. It has no activity on dsDNA or ssRNA.<ref>PMID:25773141</ref>  ssDNase activity is stimulated in the ternary Csm effector complex; binding of cognate target RNA activates the ssDNase, as the target RNA is degraded ssDNA activity decreases.[UniProtKB:A0A0A7HFE1]  When associated with the ternary Csm effector complex (the crRNA, Cas proteins and a cognate target ssRNA) synthesizes cyclic oligoadenylates (cOA) from ATP. cOAs are second messengers that stimulate the ssRNase activity of Csm6, inducing an antiviral state important for defense against invading nucleic acids.[UniProtKB:A0A0A7HFE1]  
[https://www.uniprot.org/uniprot/CSM4_THEON CSM4_THEON] CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). The type III-A Csm effector complex binds crRNA and acts as a crRNA-guided RNase, DNase and cyclic oligoadenylate synthase; binding of target RNA cognate to the crRNA is required for all activities.[UniProtKB:A0A0A7HGA1]  The subunit probably binds to the 5' handle of the crRNA, helping in discrimination between self- and non-self.[UniProtKB:A0A0A7HGA1]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Jia, N]]
[[Category: Synthetic construct]]
[[Category: Patel, D J]]
[[Category: Thermococcus onnurineus]]
[[Category: Csm1-csm4 cassette in complex with ca4]]
[[Category: Thermococcus onnurineus NA1]]
[[Category: Immune system]]
[[Category: Jia N]]
[[Category: Immune system-dna complex]]
[[Category: Patel DJ]]
[[Category: Immune system-rna complex]]
[[Category: Type iii-a crispr-cas system]]
Retrieved from "https://proteopedia.org/6o7b"