2g87: Difference between revisions

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{{Seed}}
[[Image:2g87.png|left|200px]]


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==Crystallographic model of bathorhodopsin==
The line below this paragraph, containing "STRUCTURE_2g87", creates the "Structure Box" on the page.
<StructureSection load='2g87' size='340' side='right'caption='[[2g87]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2g87]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G87 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=HTG:HEPTYL+1-THIOHEXOPYRANOSIDE'>HTG</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_2g87| PDB=2g87 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g87 OCA], [https://pdbe.org/2g87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g87 RCSB], [https://www.ebi.ac.uk/pdbsum/2g87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g87 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/OPSD_BOVIN OPSD_BOVIN] Photoreceptor required for image-forming vision at low light intensity. Required for photoreceptor cell viability after birth. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change leading to G-protein activation and release of all-trans retinal (By similarity).<ref>PMID:16908857</ref> <ref>PMID:17060607</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g8/2g87_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g87 ConSurf].
<div style="clear:both"></div>


===Crystallographic model of bathorhodopsin===
==See Also==
 
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
 
== References ==
==About this Structure==
<references/>
2G87 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G87 OCA].
__TOC__
 
</StructureSection>
==Reference==
Crystallographic analysis of primary visual photochemistry., Nakamichi H, Okada T, Angew Chem Int Ed Engl. 2006 Jun 26;45(26):4270-3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16586416 16586416]
 
Quantum mechanical studies on the crystallographic model of bathorhodopsin., Schreiber M, Sugihara M, Okada T, Buss V, Angew Chem Int Ed Engl. 2006 Jun 26;45(26):4274-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16729349 16729349]
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Nakamichi, H.]]
[[Category: Nakamichi H]]
[[Category: Okada, T.]]
[[Category: Okada T]]
[[Category: G protein-coupled receptor]]
[[Category: Rhodopsin]]
[[Category: Visual pigment]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 16:11:25 2008''
Retrieved from "https://proteopedia.org/2g87"