1vd3: Difference between revisions

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New page: left|200px<br /><applet load="1vd3" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vd3, resolution 1.80Å" /> '''Ribonuclease NT in c...
 
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[[Image:1vd3.gif|left|200px]]<br /><applet load="1vd3" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vd3, resolution 1.80&Aring;" />
'''Ribonuclease NT in complex with 2'-UMP'''<br />


==About this Structure==
==Ribonuclease NT in complex with 2'-UMP==
1VD3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa] with U2P as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA].  
<StructureSection load='1vd3' size='340' side='right'caption='[[1vd3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1vd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD3 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [https://pdbe.org/1vd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9SSV1_NICGU Q9SSV1_NICGU]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd3 ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Nicotiana glutinosa]]
[[Category: Nicotiana glutinosa]]
[[Category: Ribonuclease T(2)]]
[[Category: Kakuta Y]]
[[Category: Single protein]]
[[Category: Kawano S]]
[[Category: Kakuta, Y.]]
[[Category: Kimura M]]
[[Category: Kawano, S.]]
[[Category: Kimura, M.]]
[[Category: U2P]]
[[Category: hydrolase]]
[[Category: nucleic acid]]
[[Category: ribonuclease]]
[[Category: rna]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:10:42 2007''
Retrieved from "https://proteopedia.org/1vd3"