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[[Image:1vd6.gif|left|200px]]


{{Structure
==Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol==
|PDB= 1vd6 |SIZE=350|CAPTION= <scene name='initialview01'>1vd6</scene>, resolution 1.30&Aring;
<StructureSection load='1vd6' size='340' side='right'caption='[[1vd6]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
<table><tr><td colspan='2'>[[1vd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD6 FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd6 OCA], [https://pdbe.org/1vd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd6 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vd6 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q53W25_THET8 Q53W25_THET8]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd6_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd6 ConSurf].
<div style="clear:both"></div>


'''Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol'''
==See Also==
 
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1VD6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA].
[[Category: Large Structures]]
[[Category: Glycerophosphodiester phosphodiesterase]]
[[Category: Thermus thermophilus HB8]]
[[Category: Single protein]]
[[Category: Ishijima J]]
[[Category: Thermus thermophilus]]
[[Category: Yutani K]]
[[Category: Ishijima, J.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yutani, K.]]
[[Category: GOL]]
[[Category: glycerol complex]]
[[Category: glycerophosphodiester phosphodiesterase]]
[[Category: glycerophosphoryl diester phosphodiesterase]]
[[Category: hb8]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
[[Category: thermus thermophilus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:43:57 2008''

Latest revision as of 07:33, 30 October 2024

Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol

1vd6, resolution 1.30Å

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