2gp4: Difference between revisions

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{{Seed}}
[[Image:2gp4.png|left|200px]]


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==Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis==
The line below this paragraph, containing "STRUCTURE_2gp4", creates the "Structure Box" on the page.
<StructureSection load='2gp4' size='340' side='right'caption='[[2gp4]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gp4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GP4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.49&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2gp4|  PDB=2gp4  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gp4 OCA], [https://pdbe.org/2gp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gp4 RCSB], [https://www.ebi.ac.uk/pdbsum/2gp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gp4 ProSAT]</span></td></tr>
 
</table>
===Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis===
== Function ==
 
[https://www.uniprot.org/uniprot/Q8EEA0_SHEON Q8EEA0_SHEON] Catalyzes the dehydration of 6-phospho-D-gluconate to 2-dehydro-3-deoxy-6-phospho-D-gluconate.[HAMAP-Rule:MF_02094]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2GP4 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GP4 OCA].  
Check<jmol>
[[Category: Phosphogluconate dehydratase]]
  <jmolCheckbox>
[[Category: Shewanella oneidensis]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gp4_consurf.spt"</scriptWhenChecked>
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Schormann, N.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Symersky, J.]]
  </jmolCheckbox>
[[Category: N-terminal domain largely alpha-helical]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gp4 ConSurf].
[[Category: Protein structure initiative]]
<div style="clear:both"></div>
[[Category: Psi]]
__TOC__
[[Category: Secsg]]
</StructureSection>
[[Category: Southeast collaboratory for structural genomic]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Shewanella oneidensis MR-1]]
 
[[Category: Schormann N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:31:42 2009''
[[Category: Symersky J]]
Retrieved from "https://proteopedia.org/2gp4"