2qu9: Difference between revisions

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New page: left|200px<br /><applet load="2qu9" size="450" color="white" frame="true" align="right" spinBox="true" caption="2qu9, resolution 2.08Å" /> '''Crystal structure of...
 
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[[Image:2qu9.jpg|left|200px]]<br /><applet load="2qu9" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2qu9, resolution 2.08&Aring;" />
'''Crystal structure of the complex of group II phospholipase A2 with Eugenol'''<br />


==About this Structure==
==Crystal structure of the complex of group II phospholipase A2 with Eugenol==
2QU9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Daboia_russellii_pulchella Daboia russellii pulchella] with SO4 and EUG as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2QU9 OCA].
<StructureSection load='2qu9' size='340' side='right'caption='[[2qu9]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
[[Category: Daboia russellii pulchella]]
== Structural highlights ==
[[Category: Phospholipase A(2)]]
<table><tr><td colspan='2'>[[2qu9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Daboia_russelii_pulchella Daboia russelii pulchella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QU9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QU9 FirstGlance]. <br>
[[Category: Single protein]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
[[Category: Kaur, P.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EUG:2-METHOXY-4-[(1E)-PROP-1-EN-1-YL]PHENOL'>EUG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Kumar, S.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qu9 OCA], [https://pdbe.org/2qu9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qu9 RCSB], [https://www.ebi.ac.uk/pdbsum/2qu9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qu9 ProSAT]</span></td></tr>
[[Category: Sharma, S.]]
</table>
[[Category: Singh, N.]]
== Function ==
[[Category: Singh, T.P.]]
[https://www.uniprot.org/uniprot/PA2B8_DABRR PA2B8_DABRR] Snake venom phospholipase A2 (PLA2) that shows weak neurotoxicity and medium anticoagulant effects by binding to factor Xa (F10) and inhibiting the prothrombinase activity (IC(50) is 130 nM) (PubMed:18062812). It also damages vital organs such as lung, liver and kidney, displays edema-inducing activities when injected into the foot pads of mice and induces necrosis of muscle cells when injected into the thigh muscle. Has a low enzymatic activity. PLA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.<ref>PMID:18062812</ref> <ref>PMID:2115497</ref> <ref>PMID:8835338</ref>
[[Category: Sinha, M.]]
== Evolutionary Conservation ==
[[Category: Srinivasan, A.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Vikram, G.]]
Check<jmol>
[[Category: EUG]]
  <jmolCheckbox>
[[Category: SO4]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qu/2qu9_consurf.spt"</scriptWhenChecked>
[[Category: calcium]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: complex]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: eugenol]]
  </jmolCheckbox>
[[Category: hydrolase]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qu9 ConSurf].
[[Category: lipid degradation]]
<div style="clear:both"></div>
[[Category: metal-binding]]
[[Category: neurotoxin]]
[[Category: pla2]]
[[Category: presynaptic neurotoxin]]
[[Category: secreted]]
[[Category: toxin]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:55:10 2007''
==See Also==
*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Daboia russelii pulchella]]
[[Category: Large Structures]]
[[Category: Kaur P]]
[[Category: Kumar S]]
[[Category: Sharma S]]
[[Category: Singh N]]
[[Category: Singh TP]]
[[Category: Sinha M]]
[[Category: Srinivasan A]]
[[Category: Vikram G]]
Retrieved from "https://proteopedia.org/2qu9"