3bfm: Difference between revisions

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{{Seed}}
[[Image:3bfm.png|left|200px]]


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==Crystal structure of a biotin protein ligase-like protein of unknown function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 A resolution==
The line below this paragraph, containing "STRUCTURE_3bfm", creates the "Structure Box" on the page.
<StructureSection load='3bfm' size='340' side='right'caption='[[3bfm]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3bfm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BFM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3bfm|  PDB=3bfm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfm OCA], [https://pdbe.org/3bfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bfm RCSB], [https://www.ebi.ac.uk/pdbsum/3bfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfm ProSAT], [https://www.topsan.org/Proteins/JCSG/3bfm TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of biotin protein ligase-like protein of unknown function (YP_612389.1) from Silicibacter sp. TM1040 at 1.70 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q1GJN9_RUEST Q1GJN9_RUEST]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3BFM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Silicibacter_sp._tm1040 Silicibacter sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFM OCA].  
Check<jmol>
[[Category: Silicibacter sp. tm1040]]
  <jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfm_consurf.spt"</scriptWhenChecked>
[[Category: Jcsg]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Joint center for structural genomic]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Protein structure initiative]]
  </jmolCheckbox>
[[Category: Psi-2]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bfm ConSurf].
[[Category: Structural genomic]]
<div style="clear:both"></div>
[[Category: Unknown function]]
__TOC__
[[Category: Yp_612389 1]]
</StructureSection>
 
[[Category: Large Structures]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:47:10 2008''
[[Category: Ruegeria sp. TM1040]]
Retrieved from "https://proteopedia.org/3bfm"