3d6w: Difference between revisions

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{{Seed}}
[[Image:3d6w.png|left|200px]]


<!--
==LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.==
The line below this paragraph, containing "STRUCTURE_3d6w", creates the "Structure Box" on the page.
<StructureSection load='3d6w' size='340' side='right'caption='[[3d6w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_10987 Bacillus cereus ATCC 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D6W FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3d6w|  PDB=3d6w  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d6w OCA], [https://pdbe.org/3d6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d6w RCSB], [https://www.ebi.ac.uk/pdbsum/3d6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d6w ProSAT], [https://www.topsan.org/Proteins/MCSG/3d6w TOPSAN]</span></td></tr>
 
</table>
===LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.===
== Function ==
 
[https://www.uniprot.org/uniprot/Q73A38_BACC1 Q73A38_BACC1]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3D6W is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_10987 Bacillus cereus atcc 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6W OCA].  
Check<jmol>
[[Category: Bacillus cereus atcc 10987]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/3d6w_consurf.spt"</scriptWhenChecked>
[[Category: Edwards, A M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Evdokimova, E.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: Kudritska, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d6w ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Osipiuk, J.]]
__TOC__
[[Category: Savchenko, A.]]
</StructureSection>
[[Category: Apc7590]]
[[Category: Bacillus cereus ATCC 10987]]
[[Category: Dna binding protein]]
[[Category: Large Structures]]
[[Category: Lyttr dna-binding domain]]
[[Category: Edwards AM]]
[[Category: Mcsg]]
[[Category: Evdokimova E]]
[[Category: Methyl-accepting/dna response regulator]]
[[Category: Joachimiak A]]
[[Category: Midwest center for structural genomic]]
[[Category: Kudritska M]]
[[Category: Protein structure initiative]]
[[Category: Osipiuk J]]
[[Category: Psi-2]]
[[Category: Savchenko A]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:51:39 2008''

Latest revision as of 08:57, 30 October 2024

LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.

3d6w, resolution 2.40Å

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