2pfx: Difference between revisions

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[[Image:2pfx.gif|left|200px]]


{{Structure
==Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution==
|PDB= 2pfx |SIZE=350|CAPTION= <scene name='initialview01'>2pfx</scene>, resolution 1.70&Aring;
<StructureSection load='2pfx' size='340' side='right'caption='[[2pfx]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene> and <scene name='pdbligand=PG4:TETRAETHYLENE GLYCOL'>PG4</scene>
<table><tr><td colspan='2'>[[2pfx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PFX FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE= YP_614459.1, TM1040_2465 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 Silicibacter sp. TM1040])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pfx OCA], [https://pdbe.org/2pfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pfx RCSB], [https://www.ebi.ac.uk/pdbsum/2pfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pfx ProSAT], [https://www.topsan.org/Proteins/JCSG/2pfx TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q1GDR9_RUEST Q1GDR9_RUEST] Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity.[SAAS:SAAS00088543]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2PFX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Silicibacter_sp._tm1040 Silicibacter sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PFX OCA].
Check<jmol>
[[Category: Silicibacter sp. tm1040]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pf/2pfx_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: ACT]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: CL]]
  </jmolCheckbox>
[[Category: PG4]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pfx ConSurf].
[[Category: jcsg]]
<div style="clear:both"></div>
[[Category: joint center for structural genomic]]
__TOC__
[[Category: protein structure initiative]]
</StructureSection>
[[Category: psi-2]]
[[Category: Large Structures]]
[[Category: structural genomic]]
[[Category: Ruegeria sp. TM1040]]
[[Category: uncharacterized peroxidase-related protein]]
[[Category: yp_614459 1]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:12:32 2008''
Retrieved from "https://proteopedia.org/2pfx"