2r7f: Difference between revisions
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==Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, hexagonal crystal form. NorthEast Structural Genomics target DrR63== | ==Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, hexagonal crystal form. NorthEast Structural Genomics target DrR63== | ||
<StructureSection load='2r7f' size='340' side='right' caption='[[2r7f]], [[Resolution|resolution]] 2.70Å' scene=''> | <StructureSection load='2r7f' size='340' side='right'caption='[[2r7f]], [[Resolution|resolution]] 2.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2r7f]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2r7f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R7F FirstGlance]. <br> | ||
</ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> | ||
<tr><td class="sblockLbl"><b>[[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>[[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r7f OCA], [https://pdbe.org/2r7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r7f RCSB], [https://www.ebi.ac.uk/pdbsum/2r7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r7f ProSAT], [https://www.topsan.org/Proteins/NESGC/2r7f TOPSAN]</span></td></tr> | ||
</table> | |||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | == Function == | ||
<table> | [https://www.uniprot.org/uniprot/Q9RYD0_DEIRA Q9RYD0_DEIRA] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/2r7f_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/2r7f_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r7f ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans.,Schmier BJ, Seetharaman J, Deutscher MP, Hunt JF, Malhotra A J Mol Biol. 2011 Nov 23. PMID:22133431<ref>PMID:22133431</ref> | The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans.,Schmier BJ, Seetharaman J, Deutscher MP, Hunt JF, Malhotra A J Mol Biol. 2011 Nov 23. PMID:22133431<ref>PMID:22133431</ref> | ||
From | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 2r7f" style="background-color:#fffaf0;"></div> | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Deinococcus radiodurans | [[Category: Deinococcus radiodurans R1]] | ||
[[Category: Acton | [[Category: Large Structures]] | ||
[[Category: Baran | [[Category: Acton TB]] | ||
[[Category: Cunningham | [[Category: Baran MC]] | ||
[[Category: Fang | [[Category: Cunningham K]] | ||
[[Category: Forouhar | [[Category: Fang Y]] | ||
[[Category: Hunt | [[Category: Forouhar F]] | ||
[[Category: Liu | [[Category: Hunt JF]] | ||
[[Category: Ma | [[Category: Liu J]] | ||
[[Category: Montelione | [[Category: Ma L-C]] | ||
[[Category: Montelione GT]] | |||
[[Category: Neely | [[Category: Neely H]] | ||
[[Category: Rost | [[Category: Rost B]] | ||
[[Category: Seetharaman | [[Category: Seetharaman J]] | ||
[[Category: Tong | [[Category: Tong L]] | ||
[[Category: Wang | [[Category: Wang D]] | ||
[[Category: Xia | [[Category: Xia R]] | ||
