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==X-Ray Crystal Structure of Protein SPYM3_0169 from Streptococcus pyogenes. Northeast Structural Genomics Consortium Target DR2.==
==X-Ray Crystal Structure of Protein SPYM3_0169 from Streptococcus pyogenes. Northeast Structural Genomics Consortium Target DR2.==
<StructureSection load='1pg6' size='340' side='right' caption='[[1pg6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='1pg6' size='340' side='right'caption='[[1pg6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1pg6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_mgas8232 Streptococcus pyogenes mgas8232]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PG6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PG6 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1pg6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_MGAS8232 Streptococcus pyogenes MGAS8232]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PG6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PG6 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPS0176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186103 Streptococcus pyogenes MGAS8232])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pg6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pg6 OCA], [https://pdbe.org/1pg6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pg6 RCSB], [https://www.ebi.ac.uk/pdbsum/1pg6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pg6 ProSAT], [https://www.topsan.org/Proteins/NESGC/1pg6 TOPSAN]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pg6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pg6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pg6 RCSB], [http://www.ebi.ac.uk/pdbsum/1pg6 PDBsum], [http://www.topsan.org/Proteins/NESGC/1pg6 TOPSAN]</span></td></tr>
</table>
<table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/1pg6_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/1pg6_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pg6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Streptococcus pyogenes mgas8232]]
[[Category: Large Structures]]
[[Category: Acton, T.]]
[[Category: Streptococcus pyogenes MGAS8232]]
[[Category: Edstrom, W.]]
[[Category: Acton T]]
[[Category: Hunt, J.]]
[[Category: Edstrom W]]
[[Category: Kuzin, A.]]
[[Category: Hunt J]]
[[Category: Lee, I.]]
[[Category: Kuzin A]]
[[Category: Montelione, G.]]
[[Category: Lee I]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Montelione G]]
[[Category: Rost, B.]]
[[Category: Rost B]]
[[Category: Tong, L.]]
[[Category: Tong L]]
[[Category: Xiao, R.]]
[[Category: Xiao R]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Spym3_0169]]
[[Category: Streptococcus pyogene]]
[[Category: Structural genomic]]
[[Category: Unknown function]]