2fdr: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2fdr.gif|left|200px]]<br /><applet load="2fdr" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2fdr, resolution 2.00&Aring;" />
'''Crystal Structure of Conserved Haloacid Dehalogenase-like Protein of Unknown Function ATU0790 from Agrobacterium tumefaciens str. C58'''<br />


==About this Structure==
==Crystal Structure of Conserved Haloacid Dehalogenase-like Protein of Unknown Function ATU0790 from Agrobacterium tumefaciens str. C58==
2FDR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FDR OCA].
<StructureSection load='2fdr' size='340' side='right'caption='[[2fdr]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
[[Category: Agrobacterium tumefaciens]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2fdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FDR FirstGlance]. <br>
[[Category: Edwards, A.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
[[Category: Joachimiak, A.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fdr OCA], [https://pdbe.org/2fdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fdr RCSB], [https://www.ebi.ac.uk/pdbsum/2fdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fdr ProSAT], [https://www.topsan.org/Proteins/MCSG/2fdr TOPSAN]</span></td></tr>
[[Category: Nocek, B.]]
</table>
[[Category: Savchenko, A.]]
== Evolutionary Conservation ==
[[Category: Xu, X.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Zheng, H.]]
Check<jmol>
[[Category: MG]]
  <jmolCheckbox>
[[Category: agrobacterium tumefaciens]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/2fdr_consurf.spt"</scriptWhenChecked>
[[Category: conserved hypothetical]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: had-superfamily hydrolase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: mcsg]]
  </jmolCheckbox>
[[Category: midwest center for structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fdr ConSurf].
[[Category: protein structure initiative]]
<div style="clear:both"></div>
[[Category: psi]]
__TOC__
[[Category: putative b-phosphoglucomutase]]
</StructureSection>
[[Category: sad]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: structural genomics]]
[[Category: Large Structures]]
 
[[Category: Edwards A]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:20:20 2008''
[[Category: Joachimiak A]]
[[Category: Nocek B]]
[[Category: Savchenko A]]
[[Category: Xu X]]
[[Category: Zheng H]]