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[[Image:2ppx.jpg|left|200px]]


{{Structure
==Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens==
|PDB= 2ppx |SIZE=350|CAPTION= <scene name='initialview01'>2ppx</scene>, resolution 2.00&Aring;
<StructureSection load='2ppx' size='340' side='right'caption='[[2ppx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2ppx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPX FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
|GENE= Atu1735, AGR_C_3184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 Agrobacterium tumefaciens])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2944 COG2944]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppx OCA], [https://pdbe.org/2ppx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppx RCSB], [https://www.ebi.ac.uk/pdbsum/2ppx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppx ProSAT], [https://www.topsan.org/Proteins/MCSG/2ppx TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ppx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppx OCA], [http://www.ebi.ac.uk/pdbsum/2ppx PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ppx RCSB]</span>
</table>
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppx_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
2PPX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPX OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Agrobacterium tumefaciens]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppx ConSurf].
[[Category: Cuff, M E.]]
<div style="clear:both"></div>
[[Category: Edwards, A.]]
__TOC__
[[Category: Joachimiak, A.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Onopriyenko, O.]]
[[Category: Large Structures]]
[[Category: Savchenko, A.]]
[[Category: Cuff ME]]
[[Category: Skarina, T.]]
[[Category: Edwards A]]
[[Category: agrobacterium tumefacien]]
[[Category: Joachimiak A]]
[[Category: hth-motif]]
[[Category: Onopriyenko O]]
[[Category: mcsg]]
[[Category: Savchenko A]]
[[Category: midwest center for structural genomic]]
[[Category: Skarina T]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: xre-family]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:40:27 2008''

Latest revision as of 01:19, 21 November 2024

Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens

2ppx, resolution 2.00Å

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