2r5s: Difference between revisions

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[[Image:2r5s.jpg|left|200px]]


{{Structure
==The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633==
|PDB= 2r5s |SIZE=350|CAPTION= <scene name='initialview01'>2r5s</scene>, resolution 2.14&Aring;
<StructureSection load='2r5s' size='340' side='right'caption='[[2r5s]], [[Resolution|resolution]] 2.14&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>[[2r5s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5S FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.14&#8491;</td></tr>
|GENE= VP0806 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3118 COG3118]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5s OCA], [https://pdbe.org/2r5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5s RCSB], [https://www.ebi.ac.uk/pdbsum/2r5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5s ProSAT], [https://www.topsan.org/Proteins/MCSG/2r5s TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5s OCA], [http://www.ebi.ac.uk/pdbsum/2r5s PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2r5s RCSB]</span>
== Evolutionary Conservation ==
}}
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
'''The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633'''
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5s_consurf.spt"</scriptWhenChecked>
 
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
==About this Structure==
    <text>to colour the structure by Evolutionary Conservation</text>
2R5S is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5S OCA].  
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5s ConSurf].
[[Category: Vibrio parahaemolyticus rimd 2210633]]
<div style="clear:both"></div>
[[Category: Abdullah, J.]]
__TOC__
[[Category: Freeman, L.]]
</StructureSection>
[[Category: Joachimiak, A.]]
[[Category: Large Structures]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Tan, K.]]
[[Category: Abdullah J]]
[[Category: Wu, R.]]
[[Category: Freeman L]]
[[Category: apc090868 1]]
[[Category: Joachimiak A]]
[[Category: mcsg]]
[[Category: Tan K]]
[[Category: midwest center for structural genomic]]
[[Category: Wu R]]
[[Category: protein structure initiative]]
[[Category: protein vp0806]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: unknown function]]
[[Category: vibrio parahaemolyticus rimd 2210633]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:56:51 2008''

Latest revision as of 01:23, 21 November 2024

The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633

2r5s, resolution 2.14Å

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