2v9d: Difference between revisions

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[[Image:2v9d.png|left|200px]]


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==Crystal Structure of YagE, a prophage protein belonging to the dihydrodipicolinic acid synthase family from E. coli K12==
The line below this paragraph, containing "STRUCTURE_2v9d", creates the "Structure Box" on the page.
<StructureSection load='2v9d' size='340' side='right'caption='[[2v9d]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2v9d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V9D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2v9d| PDB=2v9d |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v9d OCA], [https://pdbe.org/2v9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v9d RCSB], [https://www.ebi.ac.uk/pdbsum/2v9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v9d ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/YAGE_ECOLI YAGE_ECOLI] Catalyzes the formation of 2-keto-3-deoxy-galactonate (KDGal) from pyruvate and glyceraldehyde. Overexpression leads to increased growth (over 2 hours) in the presence of the antibiotics norfloxacin, ampicillin and streptomycin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v9/2v9d_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v9d ConSurf].
<div style="clear:both"></div>


===CRYSTAL STRUCTURE OF YAGE, A PROPHAGE PROTEIN BELONGING TO THE DIHYDRODIPICOLINIC ACID SYNTHASE FAMILY FROM E. COLI K12===
==See Also==
 
*[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]]
 
__TOC__
==About this Structure==
</StructureSection>
[[2v9d]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V9D OCA].
[[Category: Escherichia coli K-12]]
 
[[Category: Large Structures]]
==Reference==
[[Category: Albeck S]]
<ref group="xtra">PMID:018361457</ref><references group="xtra"/>
[[Category: Bourenkov G]]
[[Category: Escherichia coli]]
[[Category: Dym O]]
[[Category: Albeck, S.]]
[[Category: Greenblatt HM]]
[[Category: Bourenkov, G.]]
[[Category: Krishnaswamy S]]
[[Category: Dym, O.]]
[[Category: Lamzin V]]
[[Category: Greenblatt, H M.]]
[[Category: Manicka S]]
[[Category: Krishnaswamy, S.]]
[[Category: Peleg Y]]
[[Category: Lamzin, V.]]
[[Category: Sussman JL]]
[[Category: Manicka, S.]]
[[Category: Unger T]]
[[Category: Peleg, Y.]]
[[Category: Sussman, J L.]]
[[Category: Unger, T.]]
[[Category: Dhdp]]
[[Category: Dihydrodipicolinic acid synthase]]
[[Category: Lyase]]
[[Category: N-acetyl neuraminate lyase]]
[[Category: Nal]]
[[Category: Prophage]]
Retrieved from "https://proteopedia.org/2v9d"