3tyf: Difference between revisions

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[[Image:3tyf.jpg|left|200px]]


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==Crystal structure of a CD1d-lysophosphatidylcholine reactive iNKT TCR==
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<StructureSection load='3tyf' size='340' side='right'caption='[[3tyf]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3tyf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TYF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.806&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_3tyf|  PDB=3tyf  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tyf OCA], [https://pdbe.org/3tyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tyf RCSB], [https://www.ebi.ac.uk/pdbsum/3tyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tyf ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Invariant Natural Killer T (iNKT) cells use highly restricted alphabeta T cell receptors (TCRs) to probe the repertoire of lipids presented by CD1d molecules. Here, we describe our studies of lysophosphatidylcholine (LPC) presentation by human CD1d and its recognition by a native, LPC-specific iNKT TCR. Human CD1d presenting LPC adopts an altered conformation from that of CD1d presenting glycolipid antigens, with a shifted alpha1 helix resulting in an open A' pocket. Binding of the iNKT TCR requires a 7-A displacement of the LPC headgroup but stabilizes the CD1d-LPC complex in a closed conformation. The iNKT TCR CDR loop footprint on CD1d-LPC is anchored by the conserved positioning of the CDR3alpha loop, whereas the remaining CDR loops are shifted, due in part to amino-acid differences in the CDR3beta and Jbeta segment used by this iNKT TCR. These findings provide insight into how lysophospholipids are presented by human CD1d molecules and how this complex is recognized by some, but not all, human iNKT cells.


===Crystal structure of a CD1d-lysophosphatidylcholine reactive iNKT TCR===
Lysophospholipid presentation by CD1d and recognition by a human Natural Killer T-cell receptor.,Lopez-Sagaseta J, Sibener LV, Kung JE, Gumperz J, Adams EJ EMBO J. 2012 Mar 6;31(8):2047-59. doi: 10.1038/emboj.2012.54. PMID:22395072<ref>PMID:22395072</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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(as it appears on PubMed at http://www.pubmed.gov), where 22395072 is the PubMed ID number.
== References ==
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{{ABSTRACT_PUBMED_22395072}}
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</StructureSection>
==About this Structure==
[[3tyf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TYF OCA].
 
==Reference==
<ref group="xtra">PMID:022395072</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Adams, E J.]]
[[Category: Large Structures]]
[[Category: Lopez-Sagaseta, J.]]
[[Category: Adams EJ]]
[[Category: Antigen recognition]]
[[Category: Lopez-Sagaseta J]]
[[Category: Cd1d]]
[[Category: Immune system]]
[[Category: Immunoglobulin-like]]
[[Category: Membrane]]
Retrieved from "https://proteopedia.org/3tyf"