3o6d: Difference between revisions

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{{Seed}}
[[Image:3o6d.jpg|left|200px]]


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==Pyridoxal phosphate biosynthetic protein PdxJ from Campylobacter jejuni in complex with pyridoxine-5'-phosphate==
The line below this paragraph, containing "STRUCTURE_3o6d", creates the "Structure Box" on the page.
<StructureSection load='3o6d' size='340' side='right'caption='[[3o6d]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3o6d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O6D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PXP:PYRIDOXINE-5-PHOSPHATE'>PXP</scene></td></tr>
{{STRUCTURE_3o6d|  PDB=3o6d  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o6d OCA], [https://pdbe.org/3o6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o6d RCSB], [https://www.ebi.ac.uk/pdbsum/3o6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o6d ProSAT]</span></td></tr>
 
</table>
===Pyridoxal phosphate biosynthetic protein PdxJ from Campylobacter jejuni in complex with pyridoxine-5'-phosphate===
== Function ==
 
[https://www.uniprot.org/uniprot/PDXJ_CAMJE PDXJ_CAMJE] Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate (By similarity).
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3O6D is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni Campylobacter jejuni subsp. jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O6D OCA].  
Check<jmol>
[[Category: Campylobacter jejuni subsp. jejuni]]
  <jmolCheckbox>
[[Category: Pyridoxine 5'-phosphate synthase]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o6/3o6d_consurf.spt"</scriptWhenChecked>
[[Category: Anderson, W F.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: Kwon, K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3o6d ConSurf].
[[Category: Osipiuk, J.]]
<div style="clear:both"></div>
[[Category: Zhou, M.]]
__TOC__
[[Category: Center for structural genomics of infectious disease]]
</StructureSection>
[[Category: Csgid]]
[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
[[Category: Idp90671]]
[[Category: Large Structures]]
[[Category: Pdxj]]
[[Category: Anderson WF]]
[[Category: Pyridoxal phosphate]]
[[Category: Joachimiak A]]
[[Category: Pyridoxine synthesis]]
[[Category: Kwon K]]
[[Category: Pyridoxine-5'-phosphate]]
[[Category: Osipiuk J]]
[[Category: Structural genomic]]
[[Category: Zhou M]]
[[Category: Transferase]]
[[Category: Vitamin b6]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Aug 12 00:01:46 2010''

Latest revision as of 06:34, 27 November 2024

Pyridoxal phosphate biosynthetic protein PdxJ from Campylobacter jejuni in complex with pyridoxine-5'-phosphate

3o6d, resolution 1.95Å

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