3axk: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 3: Line 3:
<StructureSection load='3axk' size='340' side='right'caption='[[3axk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3axk' size='340' side='right'caption='[[3axk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3axk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3AXK FirstGlance]. <br>
<table><tr><td colspan='2'>[[3axk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AXK FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1wdd|1wdd]], [[3axm|3axm]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3axk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3axk OCA], [https://pdbe.org/3axk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3axk RCSB], [https://www.ebi.ac.uk/pdbsum/3axk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3axk ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3axk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3axk OCA], [http://pdbe.org/3axk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3axk RCSB], [http://www.ebi.ac.uk/pdbsum/3axk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3axk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/RBL_ORYSJ RBL_ORYSJ]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. [[http://www.uniprot.org/uniprot/RBS1_ORYSJ RBS1_ORYSJ]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).  
[https://www.uniprot.org/uniprot/RBS1_ORYSJ RBS1_ORYSJ] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 29: Line 27:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oryza sativa japonica group]]
[[Category: Oryza sativa Japonica Group]]
[[Category: Ribulose-bisphosphate carboxylase]]
[[Category: Inoue T]]
[[Category: Inoue, T]]
[[Category: Ishida H]]
[[Category: Ishida, H]]
[[Category: Kai Y]]
[[Category: Kai, Y]]
[[Category: Kogami A]]
[[Category: Kogami, A]]
[[Category: Mae T]]
[[Category: Mae, T]]
[[Category: Makino A]]
[[Category: Makino, A]]
[[Category: Matsumura H]]
[[Category: Matsumura, H]]
[[Category: Mizohata E]]
[[Category: Mizohata, E]]
[[Category: Ueno T]]
[[Category: Ueno, T]]
[[Category: Yokota A]]
[[Category: Yokota, A]]
[[Category: Alpha/beta barrel]]
[[Category: Lyase]]
[[Category: Photosynthetic carbon reduction]]
Retrieved from "https://proteopedia.org/3axk"