Sandbox3H04: Difference between revisions
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Undo revision 4332105 by Cameron Snelbaker (Talk) |
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== Structure/Sequence Analysis == | == Structure/Sequence Analysis == | ||
<StructureSection load='3H04' size='400' side='right' caption='PDB Structure of 3H04' scene=''> | |||
'''Sequence Analysis''' | '''Sequence Analysis''' | ||
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'''Chimera''' | '''Chimera''' | ||
The structural viewing program Chimera was used to view the specific amino acids from SPRITE in the theorized functional group. 1a8q was the primary match used to model matching | The structural viewing program Chimera was used to view the specific amino acids from SPRITE in the theorized functional group. 1a8q was the primary match used to model matching 3H04’s 104 serine at 1a8q’s 94, 220 aspartate at 223, and 248 histidine at 252 respectively with a RMSD of 0.452. An overlap was performed to view the functional alignment which can be viewed here.[[Image:ChimeraAlignmentBS.png |300px|center|thumb|]] | ||
'''BLAST''' | '''BLAST''' | ||
