2dxw: Difference between revisions

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~~[[Image:2dxw.png|left|200px]]~~

~~{{STRUCTURE_2dxw| PDB=2dxw | SCENE= }}~~

==Crystal structure of Glu54 to Lys mutant of Diphthine synthase==

===Crystal structure of Glu54 to Lys mutant of Diphthine synthase===

== Structural highlights ==

<table><tr><td colspan='2'>[[2dxw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DXW FirstGlance]. <br>

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>

==~~About this Structure~~==

<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>

[[2dxw]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii~~ Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DXW OCA].

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dxw OCA], [https://pdbe.org/2dxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dxw RCSB], [https://www.ebi.ac.uk/pdbsum/2dxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dxw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dxw TOPSAN]</span></td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/DPHB_PYRHO DPHB_PYRHO] S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.<ref>PMID:20873788</ref>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/2dxw_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dxw ConSurf].

==See Also==

*[[Diphthine synthase|Diphthine synthase]]

[[Category: ~~Diphthine synthase~~]]

== References ==

[[Category: Pyrococcus horikoshii]]

[[Category: Kunishima, N.]]

__TOC__

[[Category: Matsuura, Y.]]

</StructureSection>

[[Category: Mizutani, H~~.]]~~

[[Category: Large Structures]]

~~[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]~~

[[Category: Pyrococcus horikoshii OT3]]

~~[[Category: National project on protein structural and functional analyse]]~~

[[Category: Kunishima N]]

~~[[Category: Nppsfa]]~~

[[Category: Matsuura Y]]

~~[[Category: Riken structural genomics/proteomics initiative]]~~

[[Category: Mizutani H]]

~~[[Category: Rsgi]]~~

~~[[Category: Structural genomic]]~~

~~[[Category: Transferase~~]]

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@@ Line 1: / Line 1: @@
-[[Image:2dxw.png|left|200px]]
-{{STRUCTURE_2dxw|  PDB=2dxw  |  SCENE=  }}
+==Crystal structure of Glu54 to Lys mutant of Diphthine synthase==
+<StructureSection load='2dxw' size='340' side='right'caption='[[2dxw]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-===Crystal structure of Glu54 to Lys mutant of Diphthine synthase===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2dxw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DXW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[2dxw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DXW OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dxw OCA], [https://pdbe.org/2dxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dxw RCSB], [https://www.ebi.ac.uk/pdbsum/2dxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dxw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dxw TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPHB_PYRHO DPHB_PYRHO] S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.<ref>PMID:20873788</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/2dxw_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dxw ConSurf].
+<div style="clear:both"></div>
 ==See Also==
 *[[Diphthine synthase|Diphthine synthase]]
-[[Category: Diphthine synthase]]
+== References ==
-[[Category: Pyrococcus horikoshii]]
+<references/>
-[[Category: Kunishima, N.]]
+__TOC__
-[[Category: Matsuura, Y.]]
+</StructureSection>
-[[Category: Mizutani, H.]]
+[[Category: Large Structures]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Pyrococcus horikoshii OT3]]
-[[Category: National project on protein structural and functional analyse]]
+[[Category: Kunishima N]]
-[[Category: Nppsfa]]
+[[Category: Matsuura Y]]
-[[Category: Riken structural genomics/proteomics initiative]]
+[[Category: Mizutani H]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]