User:Wayne Decatur: Difference between revisions
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Protopedia recognizes <br> and <p></p> but most times <p></p> not necessary. | Protopedia recognizes <br> and <p></p> but most times <p></p> not necessary. | ||
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Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.<br> | |||
'''Member of the [[Proteopedia:About#The Proteopedia Team|Proteopedia Editorial Board]]'''. | '''Member of the [[Proteopedia:About#The Proteopedia Team|Proteopedia Editorial Board]]'''. | ||
Project Jupyter Distinguished Contributor | |||
Member of the Bioinformatics Virtual Coordination Network Instructor Consortium | |||
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small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors. | small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors. | ||
</p> | </p> | ||
<!--[http://people.umass.edu/wdecatur/index.html Wayne's site on the web] NO LONGER WORKS--> | <!--[http://people.umass.edu/wdecatur/index.html Wayne's site on the web] NO LONGER WORKS--> | ||
[http://www.unh.edu/biochemistry/sower/post-doc-wayne-decatur.html Wayne's page on the Sower Lab site] | <!--[http://www.unh.edu/biochemistry/sower/post-doc-wayne-decatur.html Wayne's page on the Sower Lab site]--> | ||
[http:// | [http://fomightez.github.io/ Wayne at Github] | ||
[https://pubmed.ncbi.nlm.nih.gov/?term=decatur-w Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database] | |||
Past affiliations:<br> | |||
*Cornell University | |||
*University of Massachusetts at Amherst | |||
*University of New Hampshire | |||
email: {{Template:Decatur_email}} | email: {{Template:Decatur_email}} | ||
==Some Proteopedia Pages to Which I've Contributed== | ==Some Proteopedia Pages to Which I've Contributed== | ||
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*[[Flock house virus B2 protein Suppression of RNA Silencing]] | *[[Flock house virus B2 protein Suppression of RNA Silencing]] | ||
*[[Green Fluorescent Protein]] | *[[Green Fluorescent Protein]] | ||
*[[ | *[[Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa|DEAD-box helicase protein Vasa]] | ||
*[[3dmq|Swi2/Snf2 protein RapA]] | <!--*[[3dmq|Swi2/Snf2 protein RapA]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! ---> | ||
*[[2eyq|Mfd (TRCF, transcription-repair coupling factor)]] | <!--*[[2eyq|Mfd (TRCF, transcription-repair coupling factor)]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! ---> | ||
*[[3fpn|UvrA-UvrB interaction domains complex]] | <!--*[[3fpn|UvrA-UvrB interaction domains complex]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! ---> | ||
*[[3ews|DExD/H-box RNA-dependent ATPase DDX19 in the open]] and [[3g0h|closed]] cleft conformation | <!--*[[3ews|DExD/H-box RNA-dependent ATPase DDX19 in the open]] and [[3g0h|closed]] cleft conformation I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! ---> | ||
*[[3gfp|C-terminal domain of the DExD/H-box RNA-dependent ATPase Dbp5]] | <!--*[[3gfp|C-terminal domain of the DExD/H-box RNA-dependent ATPase Dbp5]]| I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! ---> | ||
*[[RecG Bound to Three-Way DNA Junction|RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork]] | *[[RecG Bound to Three-Way DNA Junction|RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork]] | ||
*[[LepA|Escherichia coli LepA, the ribosomal back translocase]] | *[[LepA|Escherichia coli LepA, the ribosomal back translocase]] | ||
*[[Pore forming toxin, α-hemolysin|The Pore Forming Toxin, α-hemolysin]] | *[[Pore forming toxin, α-hemolysin|The Pore Forming Toxin, α-hemolysin]] | ||
*[[3lqq|CED-4 Apoptosome]] | <!--*[[3lqq|CED-4 Apoptosome]] SEEMS EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! I DID FInd the FILE FOR THE MORPH FOR THIS PAGE LISTED IN MY USER CONTRIBUTIONS--> | ||
*[[Glutamate receptor (GluA2)|The Glutamate Receptor (GluA2)]] | *[[Glutamate receptor (GluA2)|The Glutamate Receptor (GluA2)]] | ||
*[[Luciferase]] | *[[Luciferase]] | ||
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*[[Leucine-rich repeat|Leucine-Rich Repeat Proteins]] | *[[Leucine-rich repeat|Leucine-Rich Repeat Proteins]] | ||
*[[Toll-like Receptors]] | *[[Toll-like Receptors]] | ||
*[[Hormone]] | |||
*[[Human Follicle-Stimulating Hormone Complexed with its Receptor]] | *[[Human Follicle-Stimulating Hormone Complexed with its Receptor]] | ||
*[[G protein-coupled receptor]] | *[[G protein-coupled receptor]] | ||
*[[Forkhead box protein M1]] | *[[Forkhead box protein M1]] | ||
<!--*[[2beg|amyloid-beta fibrils]]--> | <!--*[[2beg|amyloid-beta fibrils]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! WOULD NEED TO MOVE TO BETTER NAMED PAGE ---> | ||
*[[Kink-turn motif]] | |||
*[[Pseudouridine]] | |||
*[[Zika virus subgenomic flaviviral RNA]] | |||
*[[RNase P]] | |||
*[[yeast RNase P]] | |||
*[[Cubic Diamond Lattice Metal-Organic Framework]] | |||
*[[Catalytic Molybdenum Metal-Organic Framework]] | |||
===Topic Pages - Structural Bioinformatics=== | ===Topic Pages - Structural Bioinformatics=== | ||
*[[About Macromolecular Structure]] | *[[About Macromolecular Structure]] | ||
*[[Alternate locations]] | |||
*[[altloc]] | |||
*[[Cation-pi interactions]] | *[[Cation-pi interactions]] | ||
*[[Complexes]] | *[[Complexes]] | ||
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*[[Getting Unremediated PDB Files]] | *[[Getting Unremediated PDB Files]] | ||
*[[Net charge]] | *[[Net charge]] | ||
*[[Pseudoenzyme]] | |||
*[[Interface analysis servers]] | |||
*[[Isoelectric point]] | *[[Isoelectric point]] | ||
*[[Standard Residues]] and [[Non-Standard Residues]] | *[[Standard Residues]] and [[Non-Standard Residues]] | ||
*[[Reentrant loops]] | |||
*[[Web servers for convenient generation of publication-quality figures for molecular views]] | |||
===Topic Pages - Education=== | ===Topic Pages - Education=== | ||
*[[Teaching Strategies Using Proteopedia]] | * [[Teaching Strategies Using Proteopedia]] | ||
*[[Teaching Scenes, Tutorials, and Educators' Pages]] | * [[Teaching Scenes, Tutorials, and Educators' Pages]] | ||
*[[High school teachers' resources]] | * [[Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching]] | ||
** ''Link above is the online version of Part C of a book chapter entitled '''Publishing in Proteopedia: The Guide''' by [[User:Jaime Prilusky|Jaime Prilusky]], [[User:Wayne Decatur|Wayne Decatur]], and [[User:Eric Martz|Eric Martz]]." | |||
**'''Full Reference''': ''Jaime Prilusky, Wayne Decatur, Eric Martz. Publishing in Proteopedia: The Guide, Advancing Methods for Biomolecular Crystallography. ''In'' NATO Science for Peace and Security Series A: Chemistry and Biology 2013, pp 277-295 [[http://dx.doi.org/10.1007/978-94-007-6232-9_24 doi:10.1007/978-94-007-6232-9_24]]'' | |||
* [[High school teachers' resources]] | |||
===Meta Pages=== | ===Meta Pages=== | ||
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* [[Proteopedia:Facebook]] | * [[Proteopedia:Facebook]] | ||
* [[Proteopedia:Twitter]] | * [[Proteopedia:Twitter]] | ||
* [[Proteopedia:Macros]] | |||
* [[Proteopedia:DIY:Macros]] | |||
* [[Proteopedia:Cookbook]] | |||
* [[Combine Proteopedia scenes with inline JSmol scripting]] | |||
* [[Proteopedia:DIY:Templates]] | |||
* [[Jmol]] | * [[Jmol]] | ||
* [[DRuMS]] | * [[DRuMS]] | ||
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==Workshops, Lectures, and Seminars== | ==Workshops, Lectures, and Seminars== | ||
*[[User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012|UNH BIOCHEM833 Structural | *[[User:Wayne Decatur/ GS647-021 Structuring against Coronavirus 2020| UPSTATE MEDICAL GS647-021 Nanocourse: Structuring against Coronavirus (April-May) 2020]] | ||
*[[User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012]] | |||
*[[User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012]] | |||
*[[User:Wayne Decatur/NASCE2011|Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011]] | *[[User:Wayne Decatur/NASCE2011|Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011]] | ||
*[[User:Wayne Decatur/UNH CME Workshop March 11 2011|Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011]] | *[[User:Wayne Decatur/UNH CME Workshop March 11 2011|Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011]] | ||
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*[[Sandbox1rpu]] working out configuration&isosurfaces&dots problems | *[[Sandbox1rpu]] working out configuration&isosurfaces&dots problems | ||
*[[Sandbox2hvy]] test for dots in another file | *[[Sandbox2hvy]] test for dots in another file | ||
* [[Sandbox CsrA]] | * [[Sandbox CsrA]] | ||
* [[Sandbox TestMultiSurface]] | * [[Sandbox TestMultiSurface]] | ||
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*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]] | *[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]] | ||
*[[User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing]] | *[[User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing]] | ||
*[[User: | *[[User:Wayne Decatur/kink-turn motif]] | ||
*[[User:Wayne Decatur/Teaching Proteopedia]] | *[[User:Wayne Decatur/Teaching Proteopedia]] | ||
*[[User:Wayne Decatur/Editing Getting Unremediated PDB Files]] | *[[User:Wayne Decatur/Editing Getting Unremediated PDB Files]] | ||
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*[[User:Wayne Decatur/Generate Unfolded Structures]] | *[[User:Wayne Decatur/Generate Unfolded Structures]] | ||
*[[User:Wayne Decatur/Alter Disulfide Bonds in a Structure ]] | *[[User:Wayne Decatur/Alter Disulfide Bonds in a Structure ]] | ||
*[[User:Wayne Decatur/4ay9 pymol]] | |||
*[[User:Wayne Decatur/Hsp90 Structures with client proteins]] | |||
*[[User:Wayne Decatur/Gal 4]] | |||
*[[User:Wayne Decatur/mof_dev]] | |||
*[[User:Wayne Decatur/Homology Modeling]] | *[[User:Wayne Decatur/Homology Modeling]] | ||
*[[User:Wayne Decatur/Sequence analysis tools]] | *[[User:Wayne Decatur/Sequence analysis tools]] | ||
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*[[User:Wayne Decatur/Molecular modeling tools]] | *[[User:Wayne Decatur/Molecular modeling tools]] | ||
*[[User:Wayne Decatur/BioWikis]] | *[[User:Wayne Decatur/BioWikis]] | ||
*[[User:Wayne Decatur/Code for Molecular Structure and Visualization Work]] | |||
*[[User:Wayne Decatur/I-Ppo Morph Methods]] | *[[User:Wayne Decatur/I-Ppo Morph Methods]] | ||
*[[User:Wayne Decatur/3kg2 Morph Methods]] | *[[User:Wayne Decatur/3kg2 Morph Methods]] | ||
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*[[User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods]] | *[[User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods]] | ||
*[[User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods]] | *[[User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods]] | ||
*[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]] | |||
===Templates=== | ===Templates=== | ||
