2ams: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2ams.gif|left|200px]]<br /><applet load="2ams" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2ams, resolution 1.400&Aring;" />
'''Strucutre of the oxidized Hipip from thermochromatium tepidum at 1.4 angstrom resolution'''<br />


==About this Structure==
==Structure of the oxidized Hipip from thermochromatium tepidum at 1.4 angstrom resolution==
2AMS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=SF4:'>SF4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMS OCA].  
<StructureSection load='2ams' size='340' side='right'caption='[[2ams]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2ams]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AMS FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ams FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ams OCA], [https://pdbe.org/2ams PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ams RCSB], [https://www.ebi.ac.uk/pdbsum/2ams PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ams ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/HIP_THETI HIP_THETI] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2ams_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ams ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Allochromatium vinosum]]
[[Category: Allochromatium vinosum]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Fee, J A.]]
[[Category: Fee JA]]
[[Category: Han, W.]]
[[Category: Han W]]
[[Category: Hunsicker-Wang, L M.]]
[[Category: Hunsicker-Wang LM]]
[[Category: Noodleman, L.]]
[[Category: Noodleman L]]
[[Category: Stout, C D.]]
[[Category: Stout CD]]
[[Category: GOL]]
[[Category: SF4]]
[[Category: SO4]]
[[Category: 4fe-4s]]
[[Category: electron transport]]
[[Category: iron-sulfur protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:28:52 2008''
Retrieved from "https://proteopedia.org/2ams"