3jzv: Difference between revisions
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New page: '''Unreleased structure''' The entry 3jzv is ON HOLD Authors: Description: Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain. ''Page seeded by [http://oca.w... |
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==Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.== | |||
<StructureSection load='3jzv' size='340' side='right'caption='[[3jzv]], [[Resolution|resolution]] 2.30Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3jzv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum_ATCC_11170 Rhodospirillum rubrum ATCC 11170]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JZV FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
'' | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jzv OCA], [https://pdbe.org/3jzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jzv RCSB], [https://www.ebi.ac.uk/pdbsum/3jzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jzv ProSAT]</span></td></tr> | ||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/CUPIN_RHORT CUPIN_RHORT] Catalyzes the formation of S-(methylsulfanyl)glutathione and 1-deoxy-D-xylulose 5-phosphate (DXP) from 1-methylthioxylulose 5-phosphate (MTXu-5P) (PubMed:23035785, PubMed:23042035). The S-(methylsulfanyl)glutathione is reductively cleaved to relase methanethiol in a second reaction. Involved in the MTA-isoprenoid shunt of the methionine salvage pathway (PubMed:23042035).<ref>PMID:23035785</ref> <ref>PMID:23042035</ref> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/3jzv_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jzv ConSurf]. | |||
<div style="clear:both"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Rhodospirillum rubrum ATCC 11170]] | |||
[[Category: Almo SC]] | |||
[[Category: Burley SK]] | |||
[[Category: Ramagopal UA]] | |||
[[Category: Toro R]] | |||
Latest revision as of 09:19, 30 October 2024
Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.
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