3k1u: Difference between revisions

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{{Seed}}
[[Image:3k1u.jpg|left|200px]]


<!--
==Beta-xylosidase, family 43 glycosyl hydrolase from Clostridium acetobutylicum==
The line below this paragraph, containing "STRUCTURE_3k1u", creates the "Structure Box" on the page.
<StructureSection load='3k1u' size='340' side='right' caption='[[3k1u]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3k1u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"clostridium_acetobutyricum"_prevot_1940 "clostridium acetobutyricum" prevot 1940]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3cpn 3cpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K1U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K1U FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3k1u|  PDB=3k1u  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CA_C1529 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1488 "Clostridium acetobutyricum" Prevot 1940])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k1u OCA], [http://pdbe.org/3k1u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k1u RCSB], [http://www.ebi.ac.uk/pdbsum/3k1u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k1u ProSAT]</span></td></tr>
===Beta-xylosidase, family 43 glycosyl hydrolase from Clostridium acetobutylicum===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3K1U is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3cpn 3cpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K1U OCA].  
  <jmolCheckbox>
[[Category: Clostridium acetobutylicum]]
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k1/3k1u_consurf.spt"</scriptWhenChecked>
[[Category: Jedrzejczak, R.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Osipiuk, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k1u ConSurf].
[[Category: Wu, R.]]
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Clostridium acetobutyricum prevot 1940]]
[[Category: Jedrzejczak, R]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Osipiuk, J]]
[[Category: Wu, R]]
[[Category: Apc20493]]
[[Category: Apc20493]]
[[Category: Beta-xylosidase]]
[[Category: Beta-xylosidase]]
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[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  7 13:52:51 2009''
Retrieved from "https://proteopedia.org/3k1u"