2r8e: Difference between revisions

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{{Seed}}
[[Image:2r8e.png|left|200px]]


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==Crystal structure of YrbI from Escherichia coli in complex with Mg==
The line below this paragraph, containing "STRUCTURE_2r8e", creates the "Structure Box" on the page.
<StructureSection load='2r8e' size='340' side='right'caption='[[2r8e]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r8e]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O6 Escherichia coli O6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8E FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_2r8e|  PDB=2r8e  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8e OCA], [https://pdbe.org/2r8e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8e RCSB], [https://www.ebi.ac.uk/pdbsum/2r8e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8e ProSAT]</span></td></tr>
 
</table>
===Crystal structure of YrbI from Escherichia coli in complex with Mg===
== Function ==
 
[https://www.uniprot.org/uniprot/KDSC_ECOL6 KDSC_ECOL6] Involved in the biosynthesis of lipopolysaccharides (LPSs) (By similarity). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2R8E is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8E OCA].  
Check<jmol>
[[Category: 3-deoxy-manno-octulosonate-8-phosphatase]]
  <jmolCheckbox>
[[Category: Escherichia coli o6]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8e_consurf.spt"</scriptWhenChecked>
[[Category: Aggarwal, P.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Biswas, T.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Rubin, J R.]]
  </jmolCheckbox>
[[Category: Stuckey, J A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8e ConSurf].
[[Category: Tsodikov, O V.]]
<div style="clear:both"></div>
[[Category: Woodard, R.]]
__TOC__
[[Category: Divalent metal]]
</StructureSection>
[[Category: Had superfamily]]
[[Category: Escherichia coli O6]]
[[Category: Hydrolase]]
[[Category: Large Structures]]
[[Category: Kdo 8-p]]
[[Category: Aggarwal P]]
[[Category: Lipopolysaccharide biosynthesis]]
[[Category: Biswas T]]
[[Category: Magnesium]]
[[Category: Rubin JR]]
[[Category: Phosphatase]]
[[Category: Stuckey JA]]
[[Category: Yrbi]]
[[Category: Tsodikov OV]]
 
[[Category: Woodard R]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov  4 20:29:10 2009''
Retrieved from "https://proteopedia.org/2r8e"