1yby: Difference between revisions

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New page: left|200px<br /><applet load="1yby" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yby, resolution 1.950Å" /> '''Conserved hypotheti...
 
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[[Image:1yby.gif|left|200px]]<br /><applet load="1yby" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1yby, resolution 1.950&Aring;" />
'''Conserved hypothetical protein Cth-95 from Clostridium thermocellum'''<br />


==About this Structure==
==Conserved hypothetical protein Cth-95 from Clostridium thermocellum==
1YBY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum] with UNX as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YBY OCA].  
<StructureSection load='1yby' size='340' side='right'caption='[[1yby]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
[[Category: Clostridium thermocellum]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[1yby]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBY FirstGlance]. <br>
[[Category: Chang, J.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
[[Category: Chang, S.H.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Chen, L.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yby OCA], [https://pdbe.org/1yby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yby RCSB], [https://www.ebi.ac.uk/pdbsum/1yby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yby ProSAT], [https://www.topsan.org/Proteins/SECSG/1yby TOPSAN]</span></td></tr>
[[Category: Florence, Q.]]
</table>
[[Category: Habel, J.]]
== Evolutionary Conservation ==
[[Category: Horanyi, P.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Kataeva, I.]]
Check<jmol>
[[Category: Lee, D.]]
  <jmolCheckbox>
[[Category: Lin, D.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1yby_consurf.spt"</scriptWhenChecked>
[[Category: Liu, Z.J.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Ljundahl, L.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Nguyen, J.]]
  </jmolCheckbox>
[[Category: Rose, J.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yby ConSurf].
[[Category: SECSG, Southeast.Collaboratory.for.Structural.Genomics.]]
<div style="clear:both"></div>
[[Category: Tempel, W.]]
[[Category: Wang, B.C.]]
[[Category: Xu, H.]]
[[Category: Zhang, H.]]
[[Category: Zhao, M.]]
[[Category: Zhou, W.]]
[[Category: UNX]]
[[Category: clostridium thermocellum]]
[[Category: conserved hypothetical protein]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: secsg]]
[[Category: southeast collaboratory for structural genomics]]
[[Category: structural genomics]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 03:56:32 2007''
==See Also==
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
__TOC__
</StructureSection>
[[Category: Acetivibrio thermocellus]]
[[Category: Large Structures]]
[[Category: Chang J]]
[[Category: Chang S-H]]
[[Category: Chen L]]
[[Category: Florence Q]]
[[Category: Habel J]]
[[Category: Horanyi P]]
[[Category: Kataeva I]]
[[Category: Lee D]]
[[Category: Lin D]]
[[Category: Liu Z-J]]
[[Category: Ljundahl L]]
[[Category: Nguyen J]]
[[Category: Rose J]]
[[Category: Tempel W]]
[[Category: Wang B-C]]
[[Category: Xu H]]
[[Category: Zhang H]]
[[Category: Zhao M]]
[[Category: Zhou W]]
Retrieved from "https://proteopedia.org/1yby"