1ydf: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
New page: left|200px<br /><applet load="1ydf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ydf, resolution 2.60Å" /> '''Crystal structure of...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(16 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1ydf.gif|left|200px]]<br /><applet load="1ydf" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1ydf, resolution 2.60&Aring;" />
'''Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae'''<br />


==About this Structure==
==Crystal structure of a HAD-like phosphatase from Streptococcus pneumoniae==
1YDF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4] with MG as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA].  
<StructureSection load='1ydf' size='340' side='right'caption='[[1ydf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Streptococcus pneumoniae tigr4]]
<table><tr><td colspan='2'>[[1ydf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDF FirstGlance]. <br>
[[Category: Burley, S.K.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
[[Category: Seetharaman, J.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydf OCA], [https://pdbe.org/1ydf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydf RCSB], [https://www.ebi.ac.uk/pdbsum/1ydf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydf TOPSAN]</span></td></tr>
[[Category: Swaminathan, S.]]
</table>
[[Category: MG]]
== Function ==
[[Category: hydrolase haloacid dehalogenase-like family]]
[https://www.uniprot.org/uniprot/A0A0H2UQJ9_STRPN A0A0H2UQJ9_STRPN]  
[[Category: hypothetical protein]]
== Evolutionary Conservation ==
[[Category: new york structural genomix research consortium]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: nysgxrc]]
Check<jmol>
[[Category: protein structure initiative]]
  <jmolCheckbox>
[[Category: psi]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydf_consurf.spt"</scriptWhenChecked>
[[Category: structural genomics]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 04:00:29 2007''
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydf ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Streptococcus pneumoniae TIGR4]]
[[Category: Burley SK]]
[[Category: Seetharaman J]]
[[Category: Swaminathan S]]
Retrieved from "https://proteopedia.org/1ydf"