3kkd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3kkd.jpg|left|200px]]


<!--
==Structure of a putative tetr transcriptional regulator (pa3699) from pseudomonas aeruginosa pa01==
The line below this paragraph, containing "STRUCTURE_3kkd", creates the "Structure Box" on the page.
<StructureSection load='3kkd' size='340' side='right'caption='[[3kkd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3kkd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KKD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3kkd|  PDB=3kkd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kkd OCA], [https://pdbe.org/3kkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kkd RCSB], [https://www.ebi.ac.uk/pdbsum/3kkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kkd ProSAT]</span></td></tr>
 
</table>
===Structure of a putative tetr transcriptional regulator (pa3699) from pseudomonas aeruginosa pa01===
== Function ==
 
[https://www.uniprot.org/uniprot/Q9HXU1_PSEAE Q9HXU1_PSEAE]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3KKD is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKD OCA].  
Check<jmol>
[[Category: Pseudomonas aeruginosa pao1]]
  <jmolCheckbox>
[[Category: Chruszcz, M.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/3kkd_consurf.spt"</scriptWhenChecked>
[[Category: Cymborowski, M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Edwards, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Filippova, E V.]]
  </jmolCheckbox>
[[Category: Joachimiak, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kkd ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Minor, W.]]
__TOC__
[[Category: Savchenko, A.]]
</StructureSection>
[[Category: Skarina, T.]]
[[Category: Large Structures]]
[[Category: Dna-binding]]
[[Category: Pseudomonas aeruginosa PAO1]]
[[Category: Mcsg]]
[[Category: Chruszcz M]]
[[Category: Midwest center for structural genomic]]
[[Category: Cymborowski M]]
[[Category: Protein structure initiative]]
[[Category: Edwards A]]
[[Category: Psi-2]]
[[Category: Filippova EV]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Tetr]]
[[Category: Minor W]]
[[Category: Transcription]]
[[Category: Savchenko A]]
[[Category: Transcription regulation]]
[[Category: Skarina T]]
[[Category: Transcriptional regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 14:27:38 2009''

Latest revision as of 06:24, 27 November 2024

Structure of a putative tetr transcriptional regulator (pa3699) from pseudomonas aeruginosa pa01

3kkd, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3kkd&oldid=4280749"