3fp5: Difference between revisions

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{{Seed}}
[[Image:3fp5.png|left|200px]]


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==Crystal structure of ACBP from Moniliophthora perniciosa==
The line below this paragraph, containing "STRUCTURE_3fp5", creates the "Structure Box" on the page.
<StructureSection load='3fp5' size='340' side='right'caption='[[3fp5]], [[Resolution|resolution]] 1.61&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3fp5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Moniliophthora_perniciosa Moniliophthora perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FP5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.61&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3fp5|  PDB=3fp5  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fp5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fp5 OCA], [https://pdbe.org/3fp5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fp5 RCSB], [https://www.ebi.ac.uk/pdbsum/3fp5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fp5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/D1MPT1_MONPR D1MPT1_MONPR]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fp/3fp5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fp5 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Acyl-CoA binding protein (ACBP) is a housekeeping protein and is an essential protein in human cell lines and in Trypanosoma brucei. The ACBP of Moniliophthora perniciosa is composed of 104 amino acids and is possibly a non-classic isoform exclusively from Basidiomycetes. The M. perniciosa acbp gene was cloned, and the protein was expressed and purified. Acyl-CoA ester binding was analyzed by isoelectric focusing, native gel electrophoresis and isothermal titration calorimetry. Our results suggest an increasing affinity of ACBP for longer acyl-CoA esters, such as myristoyl-CoA to arachidoyl-CoA, and best fit modeling indicates two binding sites. ACBP undergoes a shift from a monomeric to a dimeric state, as shown by dynamic light scattering, fluorescence anisotropy and native gel electrophoresis in the absence and presence of the ligand. The protein's structure was determined at 1.6 A resolution and revealed a new topology for ACBP, containing five alpha-helices instead of four. alpha-helices 1, 2, 3 and 4 adopted a bundled arrangement that is unique from the previously determined four-helix folds of ACBP, while alpha-helices 1, 2, 4 and 5 formed a classical four-helix bundle. A MES molecule was found in the CoA binding site, suggesting that the CoA site could be a target for small compound screening.


===Crystal structure of ACBP from Moniliophthora perniciosa===
A new topology of ACBP from Moniliophthora perniciosa.,Monzani PS, Pereira HM, Melo FA, Meirelles FV, Oliva G, Cascardo JC Biochim Biophys Acta. 2010 Jan;1804(1):115-23. Epub 2009 Sep 24. PMID:19782157<ref>PMID:19782157</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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(as it appears on PubMed at http://www.pubmed.gov), where 19782157 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_19782157}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
3FP5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Moniliophthora_perniciosa Moniliophthora perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FP5 OCA].
 
==Reference==
<ref group="xtra">PMID:19782157</ref><references group="xtra"/>
[[Category: Moniliophthora perniciosa]]
[[Category: Moniliophthora perniciosa]]
[[Category: Cascardo, J C.M.]]
[[Category: Cascardo JCM]]
[[Category: Meirelles, F V.]]
[[Category: Meirelles FV]]
[[Category: Melo, F A.]]
[[Category: Melo FA]]
[[Category: Monzani, P S.]]
[[Category: Monzani PS]]
[[Category: Oliva, G.]]
[[Category: Oliva G]]
[[Category: Pereira, H M.]]
[[Category: Pereira HM]]
[[Category: Acbp]]
[[Category: Cacao disease]]
[[Category: Fatty acid metabolism]]
[[Category: Lipid binding protein]]
[[Category: Moniliophthora perniciosa]]
 
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Retrieved from "https://proteopedia.org/3fp5"