3kk5: Difference between revisions

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{{Seed}}
[[Image:3kk5.png|left|200px]]


<!--
==Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik==
The line below this paragraph, containing "STRUCTURE_3kk5", creates the "Structure Box" on the page.
<SX load='3kk5' size='340' side='right' viewer='molstar' caption='[[3kk5]], [[Resolution|resolution]] 10.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3kk5]] is a 13 chain structure with sequence from [https://en.wikipedia.org/wiki/Acanthamoeba_polyphaga Acanthamoeba polyphaga]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KK5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 10.6&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kk5 OCA], [https://pdbe.org/3kk5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kk5 RCSB], [https://www.ebi.ac.uk/pdbsum/3kk5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kk5 ProSAT]</span></td></tr>
{{STRUCTURE_3kk5|  PDB=3kk5  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik===
[https://www.uniprot.org/uniprot/MCP_PBCV1 MCP_PBCV1]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_19889775}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 19889775 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/3kk5_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_19889775}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kk5 ConSurf].
3KK5 is a 13 chains structure of sequences from [http://en.wikipedia.org/wiki/Acanthamoeba_polyphaga Acanthamoeba polyphaga]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KK5 OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</SX>
<ref group="xtra">PMID:19889775</ref><references group="xtra"/>
[[Category: Acanthamoeba polyphaga]]
[[Category: Acanthamoeba polyphaga]]
[[Category: Rossmann, M G.]]
[[Category: Large Structures]]
[[Category: Sun, S]]
[[Category: Rossmann MG]]
[[Category: Capsid protein]]
[[Category: Sun S]]
[[Category: Double jellyroll]]
[[Category: Icosahedral virus]]
[[Category: Late protein]]
[[Category: Virion]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan  6 08:55:43 2010''
Retrieved from "https://proteopedia.org/3kk5"