1yw0: Difference between revisions
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New page: left|200px<br /><applet load="1yw0" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yw0, resolution 2.70Å" /> '''Crystal structure of... |
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== | ==Crystal structure of the tryptophan 2,3-dioxygenase from Xanthomonas campestris. Northeast Structural Genomics Target XcR13.== | ||
<StructureSection load='1yw0' size='340' side='right'caption='[[1yw0]], [[Resolution|resolution]] 2.70Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[1yw0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris_str._ATCC_33913 Xanthomonas campestris pv. campestris str. ATCC 33913]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YW0 FirstGlance]. <br> | |||
[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yw0 OCA], [https://pdbe.org/1yw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yw0 RCSB], [https://www.ebi.ac.uk/pdbsum/1yw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yw0 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yw0 TOPSAN]</span></td></tr> | |||
</table> | |||
== Function == | |||
[ | [https://www.uniprot.org/uniprot/T23O_XANCP T23O_XANCP] Catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring.[HAMAP-Rule:MF_01972]<ref>PMID:17197414</ref> <ref>PMID:18783250</ref> | ||
== Evolutionary Conservation == | |||
[ | [[Image:Consurf_key_small.gif|200px|right]] | ||
[ | Check<jmol> | ||
<jmolCheckbox> | |||
[ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1yw0_consurf.spt"</scriptWhenChecked> | ||
[[ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yw0 ConSurf]. | |||
<div style="clear:both"></div> | |||
[ | |||
[[ | |||
[ | |||
==See Also== | |||
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Xanthomonas campestris pv. campestris str. ATCC 33913]] | |||
[[Category: Abashidze M]] | |||
[[Category: Aton TB]] | |||
[[Category: Ciano M]] | |||
[[Category: Forouhar F]] | |||
[[Category: Hunt JF]] | |||
[[Category: Kuzin A]] | |||
[[Category: Montelione GT]] | |||
[[Category: Tong L]] | |||
[[Category: Vorobiev SM]] | |||
[[Category: Xiao R]] | |||
Latest revision as of 07:32, 9 October 2024
Crystal structure of the tryptophan 2,3-dioxygenase from Xanthomonas campestris. Northeast Structural Genomics Target XcR13.
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