3i4v: Difference between revisions

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{{Seed}}
[[Image:3i4v.jpg|left|200px]]


<!--
==Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 3-chlorocatechol==
The line below this paragraph, containing "STRUCTURE_3i4v", creates the "Structure Box" on the page.
<StructureSection load='3i4v' size='340' side='right'caption='[[3i4v]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3i4v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I4V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CE:3-CHLOROBENZENE-1,2-DIOL'>3CE</scene>, <scene name='pdbligand=6PL:(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM+4-OXIDE'>6PL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
{{STRUCTURE_3i4v| PDB=3i4v |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i4v OCA], [https://pdbe.org/3i4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i4v RCSB], [https://www.ebi.ac.uk/pdbsum/3i4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i4v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CATA_RHOOP CATA_RHOOP]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/3i4v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i4v ConSurf].
<div style="clear:both"></div>


===Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 3-chlorocatechol===
==See Also==
 
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_20040374}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 20040374 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_20040374}}
 
==About this Structure==
3I4V is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_opacus Rhodococcus opacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I4V OCA].
 
==Reference==
<ref group="xtra">PMID:20040374</ref><references group="xtra"/>
[[Category: Catechol 1,2-dioxygenase]]
[[Category: Rhodococcus opacus]]
[[Category: Rhodococcus opacus]]
[[Category: Briganti, F.]]
[[Category: Briganti F]]
[[Category: Ferraroni, M.]]
[[Category: Ferraroni M]]
[[Category: Matera, I.]]
[[Category: Matera I]]
[[Category: Scozzafava, A.]]
[[Category: Scozzafava A]]
[[Category: Aromatic hydrocarbons catabolism]]
[[Category: Beta-sandwich]]
[[Category: Dioxygenase]]
[[Category: Iron]]
[[Category: Metal-binding]]
[[Category: Oxidoreductase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 13 14:13:54 2010''

Latest revision as of 10:03, 21 February 2024

Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 3-chlorocatechol

3i4v, resolution 2.00Å

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