3lag: Difference between revisions

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{{Seed}}
[[Image:3lag.jpg|left|200px]]


<!--
==The crystal structure of a functionally unknown protein RPA4178 from Rhodopseudomonas palustris CGA009==
The line below this paragraph, containing "STRUCTURE_3lag", creates the "Structure Box" on the page.
<StructureSection load='3lag' size='340' side='right' caption='[[3lag]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3lag]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2ozi 2ozi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LAG FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3lag|  PDB=3lag  |  SCENE=  }}
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ozi|2ozi]]</td></tr>
 
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA4178 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
===The crystal structure of a functionally unknown protein RPA4178 from Rhodopseudomonas palustris CGA009===
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lag FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lag OCA], [http://pdbe.org/3lag PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lag RCSB], [http://www.ebi.ac.uk/pdbsum/3lag PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lag ProSAT]</span></td></tr>
 
</table>
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3LAG is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAG OCA].  
Check<jmol>
[[Category: Rhodopseudomonas palustris]]
  <jmolCheckbox>
[[Category: Edwards, A.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/3lag_consurf.spt"</scriptWhenChecked>
[[Category: Evdokimova, E.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Kudritska, M.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lag ConSurf].
[[Category: Savchenko, A.]]
<div style="clear:both"></div>
[[Category: Tan, K.]]
__TOC__
</StructureSection>
[[Category: Rhopa]]
[[Category: Edwards, A]]
[[Category: Evdokimova, E]]
[[Category: Joachimiak, A]]
[[Category: Kudritska, M]]
[[Category: Structural genomic]]
[[Category: Savchenko, A]]
[[Category: Tan, K]]
[[Category: Functionally unknown protein]]
[[Category: Functionally unknown protein]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Rpa4178]]
[[Category: Rpa4178]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 16:11:30 2010''
Retrieved from "https://proteopedia.org/3lag"