3ldu: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
New page: {{Seed}} left|200px <!-- The line below this paragraph, containing "STRUCTURE_3ldu", creates the "Structure Box" on the page. You may change the PDB parameter (which se...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3ldu.jpg|left|200px]]


<!--
==The crystal structure of a possible methylase from Clostridium difficile 630.==
The line below this paragraph, containing "STRUCTURE_3ldu", creates the "Structure Box" on the page.
<StructureSection load='3ldu' size='340' side='right'caption='[[3ldu]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ldu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LDU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LDU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3ldu|  PDB=3ldu  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ldu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ldu OCA], [https://pdbe.org/3ldu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ldu RCSB], [https://www.ebi.ac.uk/pdbsum/3ldu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ldu ProSAT]</span></td></tr>
 
</table>
===The crystal structure of a possible methylase from Clostridium difficile 630.===
== Function ==
 
[https://www.uniprot.org/uniprot/Q186Y7_CLOD6 Q186Y7_CLOD6]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3LDU is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_difficile Clostridium difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LDU OCA].  
Check<jmol>
[[Category: Clostridium difficile]]
  <jmolCheckbox>
[[Category: Buck, K.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ld/3ldu_consurf.spt"</scriptWhenChecked>
[[Category: Joachimiak, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Tan, K.]]
  </jmolCheckbox>
[[Category: Wu, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ldu ConSurf].
[[Category: Mcsg]]
<div style="clear:both"></div>
[[Category: Methylase]]
__TOC__
[[Category: Methyltransferase]]
</StructureSection>
[[Category: Midwest center for structural genomic]]
[[Category: Clostridioides difficile 630]]
[[Category: Protein structure initiative]]
[[Category: Large Structures]]
[[Category: Psi-2]]
[[Category: Buck K]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
 
[[Category: Tan K]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 27 20:09:44 2010''
[[Category: Wu R]]
Retrieved from "https://proteopedia.org/3ldu"