2x34: Difference between revisions

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'''Unreleased structure'''


The entry 2x34 is ON HOLD
==Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown==
<StructureSection load='2x34' size='340' side='right'caption='[[2x34]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2x34]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharophagus_degradans_2-40 Saccharophagus degradans 2-40]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X34 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UQ8:UBIQUINONE-8'>UQ8</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x34 OCA], [https://pdbe.org/2x34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x34 RCSB], [https://www.ebi.ac.uk/pdbsum/2x34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x34 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q21LI5_SACD2 Q21LI5_SACD2]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x3/2x34_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2x34 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Saccharophagus degradans belongs to a recently discovered group of marine bacteria equipped with an arsenal of sugar cleaving enzymes coupled to carbohydrate-binding domains to degrade various insoluble complex polysaccharides. The modular Sde-1182 protein consists of a family 2 carbohydrate binding module linked to a X158 domain of unknown function. The 1.9 A and 1.55 A resolution crystal structures of the isolated X158 domain bound to the two related polyisoprenoid molecules, ubiquinone and octaprenyl pyrophosphate, unveil a beta-barrel architecture reminiscent of the YceI-like superfamily that resembles the architecture of the lipocalin fold. This unprecedented association coupling oxidoreduction and carbohydrate recognition events may have implications for effective nutrient uptake in the marine environment.


Authors: Vincent, F., Dal Molin, D., Weiner, R.M., Bourne, Y., Henrissat, B.
Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown.,Vincent F, Molin DD, Weiner RM, Bourne Y, Henrissat B FEBS Lett. 2010 Apr 16;584(8):1577-84. Epub 2010 Mar 16. PMID:20227408<ref>PMID:20227408</ref>


Description: Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 25 12:51:24 2010''
<div class="pdbe-citations 2x34" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharophagus degradans 2-40]]
[[Category: Bourne Y]]
[[Category: Dal Molin D]]
[[Category: Henrissat B]]
[[Category: Vincent F]]
[[Category: Weiner RM]]
Retrieved from "https://proteopedia.org/2x34"