3ly0: Difference between revisions

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==Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala==
The line below this paragraph, containing "STRUCTURE_3ly0", creates the "Structure Box" on the page.
<StructureSection load='3ly0' size='340' side='right'caption='[[3ly0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ly0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LY0 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.399&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LY0:(2R)-3-[(R)-[(1R)-1-AMINOETHYL](HYDROXY)PHOSPHORYL]-2-METHYLPROPANOIC+ACID'>LY0</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3ly0|  PDB=3ly0  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ly0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ly0 OCA], [https://pdbe.org/3ly0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ly0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ly0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ly0 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala===
== Function ==
 
[https://www.uniprot.org/uniprot/Q3IZQ3_CERS4 Q3IZQ3_CERS4]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3LY0 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LY0 OCA].  
Check<jmol>
[[Category: Rhodobacter sphaeroides]]
  <jmolCheckbox>
[[Category: Almo, S C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3ly0_consurf.spt"</scriptWhenChecked>
[[Category: Burley, S K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Cummings, J.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Fedorov, A A.]]
  </jmolCheckbox>
[[Category: Fedorov, E V.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ly0 ConSurf].
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Raushel, F M.]]
__TOC__
[[Category: Hydrolase]]
</StructureSection>
[[Category: Metallo peptidase]]
[[Category: Cereibacter sphaeroides 2 4.1]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Large Structures]]
[[Category: Nysgrc]]
[[Category: Almo SC]]
[[Category: Nysgxrc]]
[[Category: Burley SK]]
[[Category: Phosphinate inhibitor]]
[[Category: Cummings J]]
[[Category: Protein structure initiative]]
[[Category: Fedorov AA]]
[[Category: Psi-2]]
[[Category: Fedorov EV]]
[[Category: Structural genomic]]
[[Category: Raushel FM]]
[[Category: Target 9523c]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 14:57:03 2010''

Latest revision as of 08:45, 6 September 2023

Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala

3ly0, resolution 1.40Å

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