3lat: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3lat.png|left|200px]]


<!--
==Crystal structure of Staphylococcus peptidoglycan hydrolase AmiE==
The line below this paragraph, containing "STRUCTURE_3lat", creates the "Structure Box" on the page.
<StructureSection load='3lat' size='340' side='right'caption='[[3lat]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3lat]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis Staphylococcus epidermidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LAT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BU1:1,4-BUTANEDIOL'>BU1</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3lat|  PDB=3lat  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lat OCA], [https://pdbe.org/3lat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lat RCSB], [https://www.ebi.ac.uk/pdbsum/3lat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lat ProSAT]</span></td></tr>
 
</table>
===Crystal structure of Staphylococcus peptidoglycan hydrolase AmiE===
== Function ==
 
[https://www.uniprot.org/uniprot/ATL_STAEP ATL_STAEP]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_20300605}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 20300605 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/3lat_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_20300605}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3LAT is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis Staphylococcus epidermidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LAT OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lat ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:20300605</ref><references group="xtra"/>
</StructureSection>
[[Category: N-acetylmuramoyl-L-alanine amidase]]
[[Category: Large Structures]]
[[Category: Staphylococcus epidermidis]]
[[Category: Staphylococcus epidermidis]]
[[Category: Stehle, T.]]
[[Category: Stehle T]]
[[Category: Zoll, S.]]
[[Category: Zoll S]]
[[Category: Amidase]]
[[Category: Atle]]
[[Category: Autolysin]]
[[Category: Cell wall biogenesis/degradation]]
[[Category: Hydrolase]]
[[Category: Multifunctional enzyme]]
[[Category: Peptidoglycan hydrolase]]
[[Category: Secreted]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 12:26:00 2010''
Retrieved from "https://proteopedia.org/3lat"