3lyy: Difference between revisions

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{{Seed}}
[[Image:3lyy.jpg|left|200px]]


<!--
==Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A==
The line below this paragraph, containing "STRUCTURE_3lyy", creates the "Structure Box" on the page.
<StructureSection load='3lyy' size='340' side='right'caption='[[3lyy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3lyy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_pentosaceus_ATCC_25745 Pediococcus pentosaceus ATCC 25745]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LYY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3lyy|  PDB=3lyy  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lyy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyy OCA], [https://pdbe.org/3lyy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lyy RCSB], [https://www.ebi.ac.uk/pdbsum/3lyy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyy ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A===
== Function ==
 
[https://www.uniprot.org/uniprot/Q03HU7_PEDPA Q03HU7_PEDPA]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3LYY is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Pediococcus_pentosaceus Pediococcus pentosaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYY OCA].  
Check<jmol>
[[Category: Pediococcus pentosaceus]]
  <jmolCheckbox>
[[Category: Acton, T B.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyy_consurf.spt"</scriptWhenChecked>
[[Category: Baran, M C.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Cunningham, K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Hunt, J F.]]
  </jmolCheckbox>
[[Category: Janjua, H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyy ConSurf].
[[Category: Lew, S.]]
<div style="clear:both"></div>
[[Category: Liu, J.]]
__TOC__
[[Category: Montelione, G T.]]
</StructureSection>
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Large Structures]]
[[Category: Owens, L.]]
[[Category: Pediococcus pentosaceus ATCC 25745]]
[[Category: Seetharaman, J.]]
[[Category: Acton TB]]
[[Category: Tong, L.]]
[[Category: Baran MC]]
[[Category: Wang, D.]]
[[Category: Cunningham K]]
[[Category: Xiao, R.]]
[[Category: Hunt JF]]
[[Category: Cell adhesion]]
[[Category: Janjua H]]
[[Category: Cell wall]]
[[Category: Lew S]]
[[Category: Nesg]]
[[Category: Liu J]]
[[Category: Northeast structural genomics consortium]]
[[Category: Montelione GT]]
[[Category: Peptidoglycan-anchor]]
[[Category: Owens L]]
[[Category: Protein structure initiative]]
[[Category: Seetharaman J]]
[[Category: Psi-2]]
[[Category: Tong L]]
[[Category: Structural genomic]]
[[Category: Wang D]]
 
[[Category: Xiao R]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  7 10:52:30 2010''

Latest revision as of 09:25, 30 October 2024

Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A

3lyy, resolution 1.90Å

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