3jrf: Difference between revisions

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{{Seed}}
[[Image:3jrf.jpg|left|200px]]


<!--
==Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center==
The line below this paragraph, containing "STRUCTURE_3jrf", creates the "Structure Box" on the page.
<StructureSection load='3jrf' size='340' side='right'caption='[[3jrf]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3jrf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JRF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jrf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jrf OCA], [https://pdbe.org/3jrf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jrf RCSB], [https://www.ebi.ac.uk/pdbsum/3jrf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jrf ProSAT]</span></td></tr>
{{STRUCTURE_3jrf| PDB=3jrf |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/FIS_ECOLI FIS_ECOLI] Activates ribosomal RNA transcription, as well other genes. Plays a direct role in upstream activation of rRNA promoters. Binds to a recombinational enhancer sequence that is required to stimulate hin-mediated DNA inversion. Prevents initiation of DNA replication from oriC.<ref>PMID:2209559</ref> <ref>PMID:8836178</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/3jrf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jrf ConSurf].
<div style="clear:both"></div>


===Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center===
==See Also==
 
*[[FIS protein|FIS protein]]
 
== References ==
<!--
<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_20395367}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 20395367 is the PubMed ID number.
</StructureSection>
-->
[[Category: Escherichia coli K-12]]
{{ABSTRACT_PUBMED_20395367}}
[[Category: Large Structures]]
 
[[Category: Cascio D]]
==About this Structure==
[[Category: Johnson RC]]
3JRF is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JRF OCA].
[[Category: Stella S]]
 
==Reference==
<ref group="xtra">PMID:20395367</ref><references group="xtra"/>
[[Category: Escherichia coli k-12]]
[[Category: Cascio, D.]]
[[Category: Johnson, R C.]]
[[Category: Stella, S.]]
[[Category: Activator]]
[[Category: Dna bending]]
[[Category: Dna binding protein-dna complex]]
[[Category: Dna-binding]]
[[Category: Hth domain]]
[[Category: Indirect recognition]]
[[Category: Minor groove compression]]
[[Category: Protein-dna complex]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 28 10:57:35 2010''
Retrieved from "https://proteopedia.org/3jrf"