Alignment of 1rpu vs 1r9f: Difference between revisions

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<code><nowiki>
[[1rpu]] = Carnation italian ringspot virus p19<br>
lcl|50431 1r9f:A
[[1r9f]] = Tomato bushy stunt virus p19
Length=121


Score =  226 bits (576),  Expect = 1e-64, Method: Compositional matrix adjust.
Sequences in structures obtained from PDBsum and aligned.<br>
Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>
Length=121<br>
Score =  226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.<br>
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)


1rpu  19  ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  75
          +TSPFKLPDESPSWTEWRL+NDE  NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f  2    MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  61


1rpu  76  SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL  134
<small><b><font face = 'courier'>
          SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1rpu  19  ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  75<br>
1rpf 62  SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM  120
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+TSPFKLPDESPSWTEWRL+NDE&nbsp;&nbsp;&nbsp;NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
</nowiki>
1r9f  2&nbsp;    MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  61<br>
</code>
 
1rpu  76  SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL  134<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
1r9f 62  SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM  120<br>
</font></b></small><br>

Latest revision as of 02:43, 16 May 2010

1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19

Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576) Expect = 1e-64 Method: Compositional matrix adjust.
Identities = 106/119 (89%) Positives = 114/119 (95%) Gaps = 3/119 (2%)


1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
        +TSPFKLPDESPSWTEWRL+NDE   NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61

1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
        SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120

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