3mdp: Difference between revisions

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{{Seed}}
[[Image:3mdp.jpg|left|200px]]


<!--
==Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from Geobacter metallireducens GS-15 at 1.90 A resolution==
The line below this paragraph, containing "STRUCTURE_3mdp", creates the "Structure Box" on the page.
<StructureSection load='3mdp' size='340' side='right'caption='[[3mdp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3mdp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene></td></tr>
{{STRUCTURE_3mdp|  PDB=3mdp  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdp OCA], [https://pdbe.org/3mdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mdp RCSB], [https://www.ebi.ac.uk/pdbsum/3mdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdp ProSAT]</span></td></tr>
 
</table>
===Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from Geobacter metallireducens GS-15 at 1.90 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q39VF8_GEOMG Q39VF8_GEOMG]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3MDP is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacter_metallireducens Geobacter metallireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDP OCA].  
Check<jmol>
[[Category: Geobacter metallireducens]]
  <jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdp_consurf.spt"</scriptWhenChecked>
[[Category: Cyclic nucleotide-binding domain]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Double-stranded beta-helix fold]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Jcsg]]
  </jmolCheckbox>
[[Category: Joint center for structural genomic]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mdp ConSurf].
[[Category: Nucleotide binding protein]]
<div style="clear:both"></div>
[[Category: Protein structure initiative]]
__TOC__
[[Category: Psi-2]]
</StructureSection>
[[Category: Structural genomic]]
[[Category: Geobacter metallireducens GS-15]]
 
[[Category: Large Structures]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:50:15 2010''
Retrieved from "https://proteopedia.org/3mdp"