User:Mary Ball/Scenes: Difference between revisions
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{{STRUCTURE_1acj| PDB=1acj | SCENE= }} | {{STRUCTURE_1acj| PDB=1acj | SCENE= }} | ||
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To zoom in on acetylcholinesterase's active site, click on the following green phrase: <scene name='1acj/Active_site_of_1acj/2'>AChE's active site</scene>. | To zoom in on acetylcholinesterase's active site, click on the following green phrase: <scene name='1acj/Active_site_of_1acj/2'>AChE's active site</scene>. | ||
Clicking on the green phrase triggers a transition to what is called a Scene. | Clicking on the green phrase triggers a transition to what is called a Scene. For more information on creating and using scenes in Proteopedia pages, see the rest of this Tutorial. | ||
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=='''Using the 'load molecule' tab to "start fresh" to create a scene'''== | =='''Using the 'load molecule' tab to "start fresh" to create a scene'''== | ||
The load molecule tab is used to load molecules into Jmol. Currently only one file can be loaded into Jmol at a time through this interface (but Jmol can handle several files at a time). | The load molecule tab is used to load molecules into Jmol. Currently only one file can be loaded into Jmol at a time through this interface (but Jmol can handle several files at a time). | ||
To load a file that has PDB code, input a PDB code into the first input area and click the load button. The file will be fetched from the PDB database | To load a file that has PDB code, input a PDB code into the first input area and click the load button. The file will be fetched from the PDB database through [http://bip.weizmann.ac.il/oca-bin/ocamain OCA]. | ||
To load a file that is not part of the PDB, first upload the file to Proteopedia at [[Special:Upload]] (you can get there also by using the link called 'upload file' on the left hand column-toolbar of Proteopedia). Do NOT upload any image from a scientific publication or website unless you have permission to display that image on Proteopedia. Uploading an image that you have created or a PDB file that you have modified is always okay. | |||
Once a file has been uploaded, you can specify its name in the input area next to the words "From Proteopedia uploaded file" and click load. | |||
The "currently loaded" text area displays the name of the currently loaded file in the Jmol applet of the "Scene authoring tools". | The "currently loaded" text area displays the name of the currently loaded file in the Jmol applet of the "Scene authoring tools". | ||
