3ndy: Difference between revisions
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New page: '''Unreleased structure''' The entry 3ndy is ON HOLD until sometime in the future Authors: Bianchetti, C.M, Smith, R.W., Bingman, C.A., Phillips Jr., G.N. Description: The structure of... |
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The entry 3ndy | ==The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans== | ||
<StructureSection load='3ndy' size='340' side='right'caption='[[3ndy]], [[Resolution|resolution]] 2.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3ndy]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_cellulovorans Clostridium cellulovorans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3icg 3icg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NDY FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ndy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndy OCA], [https://pdbe.org/3ndy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ndy RCSB], [https://www.ebi.ac.uk/pdbsum/3ndy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ndy ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/GUND_CLOC7 GUND_CLOC7] Has endoglucanase activity on carboxymethyl-cellulose (CMC), cellobiosidase activity on p-nitrophenyl-cellobioside (p-NPC), and partial hydrolytic activity on crystalline cellulose (Avicel). | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nd/3ndy_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ndy ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | |||
*[[Glucanase 3D structures|Glucanase 3D structures]] | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Clostridium cellulovorans]] | |||
[[Category: Large Structures]] | |||
[[Category: Bianchetti CM]] | |||
[[Category: Bingman CA]] | |||
[[Category: Phillips Jr GN]] | |||
[[Category: Smith RW]] | |||
Latest revision as of 10:29, 21 February 2024
The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans
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