2xdi: Difference between revisions

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{{Seed}}
[[Image:2xdi.jpg|left|200px]]


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==Tryptophan repressor with L75F mutation in its apo form (no L- tryptophan bound)==
The line below this paragraph, containing "STRUCTURE_2xdi", creates the "Structure Box" on the page.
<StructureSection load='2xdi' size='340' side='right'caption='[[2xdi]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2xdi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XDI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xdi OCA], [https://pdbe.org/2xdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xdi RCSB], [https://www.ebi.ac.uk/pdbsum/2xdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xdi ProSAT]</span></td></tr>
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</table>
{{STRUCTURE_2xdi|  PDB=2xdi  |  SCENE=  }}
== Function ==
[[https://www.uniprot.org/uniprot/TRPR_ECO57 TRPR_ECO57]] This protein is an aporepressor. When complexed with L-tryptophan it binds the operator region of the trp operon (5'-ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xd/2xdi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xdi ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
L75F-TrpR is a temperature-sensitive mutant of the tryptophan repressor protein of Escherichia coli in which surface-exposed residue leucine 75 in the DNA binding domain is replaced with phenylalanine. Biochemical and biophysical studies had suggested global alterations in dynamics for L75F-TrpR, although the structure was apparently similar to that of wild-type TrpR. Herein, we report the three-dimensional solution structure of apo-L75F-TrpR determined by multidimensional ((1)H, (15)N, and (13)C) solution NMR spectroscopy. An ensemble of structures was generated from 769 unique NOE-based distance restraints, 68 dihedral angle restraints, and 62 hydrogen bond distance restraints. Apo-L75F-TrpR exhibits a three-dimensional (3D) fold very similar to that of apo-WT-TrpR, with a dimeric core of four alpha-helices (A-C and F) from each subunit, and less well-defined D and E helical regions of the DNA binding domains. Despite their many similarities, wild-type and mutant proteins display significant chemical shift differences, one cluster of which is in the B-C turn, too distant to be ascribed solely to ring current effects from Phe75. Differences in NOE patterns and amide proton exchange rates are also observed in the B-C turn region. The data provide evidence that this point mutation exerts local effects on structure and stability in the DNA binding domain, and propagates long-range effects through the tertiary structure.


===TRYPTOPHAN REPRESSOR WITH L75F MUTATION IN ITS APO FORM (NO L-TRYPTOPHAN BOUND)===
Three-dimensional solution NMR structure of Apo-L75F-TrpR, a temperature-sensitive mutant of the tryptophan repressor protein.,Tyler R, Pelczer I, Carey J, Copie V Biochemistry. 2002 Oct 8;41(40):11954-62. PMID:12356295<ref>PMID:12356295</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_12356295}}, adds the Publication Abstract to the page
<div class="pdbe-citations 2xdi" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 12356295 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_12356295}}
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</StructureSection>
==About this Structure==
[[Category: Bacillus coli migula 1895]]
2XDI is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDI OCA].
[[Category: Large Structures]]
 
[[Category: Copie, V]]
==Reference==
[[Category: Tyler, R]]
<ref group="xtra">PMID:12356295</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Copie, V.]]
[[Category: Tyler, R.]]
[[Category: Apo-l75f-trpr]]
[[Category: Apo-l75f-trpr]]
[[Category: L-trp binding]]
[[Category: L-trp binding]]
[[Category: Transcription]]
[[Category: Transcription]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  7 08:38:48 2010''
Retrieved from "https://proteopedia.org/2xdi"