2xii: Difference between revisions

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~~{{Seed}}~~

~~[[Image:2xii.jpg|left|200px]]~~

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==CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH AN EXTENDED 9-FLUORENONE IMINOSUGAR INHIBITOR==

~~The line below this paragraph, containing "STRUCTURE_2xii", creates the "Structure Box" on the page.~~

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

== Structural highlights ==

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<table><tr><td colspan='2'>[[2xii]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XII FirstGlance]. <br>

~~or leave the SCENE parameter empty for the default display.~~

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>

~~-->~~

<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TA9:9-OXO-N-[[(2R,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-METHYL-PIPERIDIN-2-YL]METHYL]FLUORENE-1-CARBOXAMIDE'>TA9</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>

~~{{STRUCTURE_2xii| PDB=2xii | SCENE= }}~~

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xii OCA], [https://pdbe.org/2xii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xii RCSB], [https://www.ebi.ac.uk/pdbsum/2xii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xii ProSAT]</span></td></tr>

</table>

===CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH AN EXTENDED 9-FLUORENONE IMINOSUGAR INHIBITOR===

== Function ==

[https://www.uniprot.org/uniprot/Q8A3I4_BACTN Q8A3I4_BACTN]

== Evolutionary Conservation ==

==~~About this Structure~~==

[[Image:Consurf_key_small.gif|200px|right]]

~~2XII~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [~~http~~://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XII OCA].

Check<jmol>

[[~~Category~~: ~~Alpha~~-L-~~fucosidase~~]]

<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/2xii_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xii ConSurf].

__TOC__

</StructureSection>

[[Category: Bacteroides thetaiotaomicron]]

[[Category: ~~Bueren, A Lammerts Van.~~]]

[[Category: Large Structures]]

[[Category: Davies~~, G J.~~]]

[[Category: Davies GJ]]

[[Category: ~~Lin, C H.~~]]

[[Category: Lammerts van Bueren A]]

[[Category: ~~Popat, S.~~]]

[[Category: Lin CH]]

[[Category: ~~Fucose]]~~

[[Category: Popat SD]]

~~[[Category: Hydrolase]~~]

~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Jul 21 10:15:14 2010''~~

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@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:2xii.jpg|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH AN EXTENDED 9-FLUORENONE IMINOSUGAR INHIBITOR==
-The line below this paragraph, containing "STRUCTURE_2xii", creates the "Structure Box" on the page.
+<StructureSection load='2xii' size='340' side='right'caption='[[2xii]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2xii]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XII FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TA9:9-OXO-N-[[(2R,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-METHYL-PIPERIDIN-2-YL]METHYL]FLUORENE-1-CARBOXAMIDE'>TA9</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
-{{STRUCTURE_2xii|  PDB=2xii  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xii OCA], [https://pdbe.org/2xii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xii RCSB], [https://www.ebi.ac.uk/pdbsum/2xii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xii ProSAT]</span></td></tr>
+</table>
-===CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH AN EXTENDED 9-FLUORENONE IMINOSUGAR INHIBITOR===
+== Function ==
+[https://www.uniprot.org/uniprot/Q8A3I4_BACTN Q8A3I4_BACTN]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-XII is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XII OCA].
+Check<jmol>
-[[Category: Alpha-L-fucosidase]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/2xii_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xii ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Bacteroides thetaiotaomicron]]
-[[Category: Bueren, A Lammerts Van.]]
+[[Category: Large Structures]]
-[[Category: Davies, G J.]]
+[[Category: Davies GJ]]
-[[Category: Lin, C H.]]
+[[Category: Lammerts van Bueren A]]
-[[Category: Popat, S.]]
+[[Category: Lin CH]]
-[[Category: Fucose]]
+[[Category: Popat SD]]
-[[Category: Hydrolase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 10:15:14 2010''